Non-Coding RNA Search

Ss1.1-rgul0103_f1.5

Sequence:


               
               CAAGATGGTGTCGTGCTAGTGTCAAACGTCAGCCCACAGAGCTAATAATACCTCAGTCTA
ATGTCACAGGCAGTTGAAAGTCATCACATGAAAGGGGATCTGCTGAAAGACTCGGTTGCC
CGCTGCCTAACCATGTACAGTGTTACCCGCAGCCCGTTGTGGATAACTCTCAGTATATCC
ATGCCTGAGTGTTCCCGGTGCCTTTTCCCCTCATGTCACTACTGAATTTTGACAGGAGGA
AGGAATAGACAGTAGCTTTTTTTCCTTAAAGCTTTGGTGAAACACTACAAACATGAAGAA
AAGGAACAAGGTTTAACTATTTAAAAACTGTGTGCTGCCGCTTAGTGCCAATGGATAGGG
GAAGAAGTTCACAAATCTGTGGTACTCTTGGCCTTTGTCTTTGTCTTCCCTGAAAATGTC
TCCACTCTGTGAAGCCAGCATCTAGGGTCTAAAGATGAACAGGAAAGCAGCATGCATTGT
CTGTACAAACATGGAGTGAAATATCCCCAGAGCTTTTCCTACTGTACAGATCTCTTGAGT
CTGCTTTAAGTGATTTCTTTTCTTCCTTATTATTTTCTTATATTTCTATATGTATAGTGT
AATAGTCTTTTGTTAACTAATTTTCTTTTTTCCTTTTAGTGATTAAGCACGATCATGTCC
CTTTTTAAGCCTTACCTGAGCGAAGCAATGCCTTAAAAGAAAAAAGCATTAATGAAATGA
AACCATGCACAAAATAACTTTCCTCTCCTTCCTCTGTACTTTGCCCTCATAAGTGCCGAT
GTTCTGTGAAGACATACGATGCTGCACAGTGAACTGCAAACAATATTACAAGACTTATGT
CTGTAGGTCACACTATATACTGACCTTCTCAGTGGGTAGCACAATTCAGTATTTTATCTT
CCACAAGGAAGCCTAAAACAAAAGATATTTTTAACCCACTGACAGCAACAAGGTTAAGCT
TGCTTTACCTGCCGGTGTCCCACAGAACTTTCACCAGAGATTACTGTTGGGAAAGTACAG
TTTCAAAACCAGCAACAATAGCAGTACCTACAGCCCTTTTTTTGGAGAGAAATTTATATG
CTTTACTGTTGGGGCAGTCCATTTCTAAACCTGACTTGGTGGCAGTATCTTCTGTATTTA
TAAACAAGGCTAGTCATATTTAGGACAACTGAAGAAAAGCTGGAAAAAAGAAAAACAAGC
AGACTTGAACACTGAAGCAACCTCAAGCATCTCTTTATTTTGATGATATATTTTTATAAG
GAAAATAAGTATTCAGATGATCAGGAATGTATATAACTAAATGAAATCAAGAAAAAGAAA
TAACAGTATGCATTTAAACAAACAGAATTATGAAATTATATATCAATGCTTAGAACGGGG
CTAAAGGAAGTGCTGTAATGTAGCAAGAGATAGATAATGTAGACTGTCACCCACTGTAAA
TGTTTGCAAATGAATATTTTTTAAATAAACGAAATTATTACAGGTGATTCTATATGAATG
TCAAAGCCTTAACTTCTAGGCTTTACATCTTGTATATGGGAAGAACTATGACAATCCTAG
TTAATTAGACAATAAGCCCAAAGCCCTTACATTTGATGCATTTTGTTTTAAAAATAGGCC
TTGTTTTTCAGCTTCATCTGCAGTTCTATGTGAAGATTGATAAATCAGTTTTTACTTGTT
TTATTAATAAAACGTAATTTGGATATCTTGAGTTGATGGTTTTGTGATTTAGCTGGGTAA
ACTATCTTTGTAACAGATAAGTTATTTATAAAAATTAAAAAACTTATATTCTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGATGGTGTCGTGCTAGTGTCAAACGTCAGCCCACAGAGCTAATAATACCTCAGTCTA
ATGTCACAGGCAGTTGAAAGTCATCACATGAAAGGGGATCTGCTGAAAGACTCGGTTGCC
CGCTGCCTAACCATGTACAGTGTTACCCGCAGCCCGTTGTGGATAACTCTCAGTATATCC
ATGCCTGAGTGTTCCCGGTGCCTTTTCCCCTCATGTCACTACTGAATTTTGACAGGAGGA
AGGAATAGACAGTAGCTTTTTTTCCTTAAAGCTTTGGTGAAACACTACAAACATGAAGAA
AAGGAACAAGGTTTAACTATTTAAAAACTGTGTGCTGCCGCTTAGTGCCAATGGATAGGG
GAAGAAGTTCACAAATCTGTGGTACTCTTGGCCTTTGTCTTTGTCTTCCCTGAAAATGTC
TCCACTCTGTGAAGCCAGCATCTAGGGTCTAAAGATGAACAGGAAAGCAGCATGCATTGT
CTGTACAAACATGGAGTGAAATATCCCCAGAGCTTTTCCTACTGTACAGATCTCTTGAGT
CTGCTTTAAGTGATTTCTTTTCTTCCTTATTATTTTCTTATATTTCTATATGTATAGTGT
AATAGTCTTTTGTTAACTAATTTTCTTTTTTCCTTTTAGTGATTAAGCACGATCATGTCC
CTTTTTAAGCCTTACCTGAGCGAAGCAATGCCTTAAAAGAAAAAAGCATTAATGAAATGA
AACCATGCACAAAATAACTTTCCTCTCCTTCCTCTGTACTTTGCCCTCATAAGTGCCGAT
GTTCTGTGAAGACATACGATGCTGCACAGTGAACTGCAAACAATATTACAAGACTTATGT
CTGTAGGTCACACTATATACTGACCTTCTCAGTGGGTAGCACAATTCAGTATTTTATCTT
CCACAAGGAAGCCTAAAACAAAAGATATTTTTAACCCACTGACAGCAACAAGGTTAAGCT
TGCTTTACCTGCCGGTGTCCCACAGAACTTTCACCAGAGATTACTGTTGGGAAAGTACAG
TTTCAAAACCAGCAACAATAGCAGTACCTACAGCCCTTTTTTTGGAGAGAAATTTATATG
CTTTACTGTTGGGGCAGTCCATTTCTAAACCTGACTTGGTGGCAGTATCTTCTGTATTTA
TAAACAAGGCTAGTCATATTTAGGACAACTGAAGAAAAGCTGGAAAAAAGAAAAACAAGC
AGACTTGAACACTGAAGCAACCTCAAGCATCTCTTTATTTTGATGATATATTTTTATAAG
GAAAATAAGTATTCAGATGATCAGGAATGTATATAACTAAATGAAATCAAGAAAAAGAAA
TAACAGTATGCATTTAAACAAACAGAATTATGAAATTATATATCAATGCTTAGAACGGGG
CTAAAGGAAGTGCTGTAATGTAGCAAGAGATAGATAATGTAGACTGTCACCCACTGTAAA
TGTTTGCAAATGAATATTTTTTAAATAAACGAAATTATTACAGGTGATTCTATATGAATG
TCAAAGCCTTAACTTCTAGGCTTTACATCTTGTATATGGGAAGAACTATGACAATCCTAG
TTAATTAGACAATAAGCCCAAAGCCCTTACATTTGATGCATTTTGTTTTAAAAATAGGCC
TTGTTTTTCAGCTTCATCTGCAGTTCTATGTGAAGATTGATAAATCAGTTTTTACTTGTT
TTATTAATAAAACGTAATTTGGATATCTTGAGTTGATGGTTTTGTGATTTAGCTGGGTAA
ACTATCTTTGTAACAGATAAGTTATTTATAAAAATTAAAAAACTTATATTCTAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1170-1702, gnl|bosTau2|chr22 (2461771-2462300)
               

               
               1170-1702, gnl|Hg17|chr6 (149773831-149774344)
               

               
               1170-1702, gnl|Mm7|chr10 (7606520-7605994)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1170-1702, gnl|bosTau2|chr22 (2461771-2462300)
               

               
               1170-1702, gnl|Hg17|chr6 (149773831-149774344)
               

               
               1170-1702, gnl|Mm7|chr10 (7606520-7605994)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               liv (0.585137)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               kid (0.259471)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               kid (0.259471)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1170-1702, gnl\|bosTau2\|chr22 (2461771-2462300)
	1170-1702, gnl\|Hg17\|chr6 (149773831-149774344)
	1170-1702, gnl\|Mm7\|chr10 (7606520-7605994)

	liv (0.585137)
	tra (0.492368)
	mga (0.480615)
	mgm (0.360685)
	vin (0.332557)
	bfe (0.299715)
	kid (0.259471)
	cbl (0.229595)
	aor (0.195274)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	cag (0.151194)
	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	ste (0.135208)
	sug (0.127291)
	ebs (0.118301)
	cty (0.10408)