Non-Coding RNA Search

Ss1.1-rgul0103_h13.5

Sequence:


               
               AAAAAAACGCATTCTTCTGTTTACCAGCTAAGATTTAGGATGTTTGTATTTCATTAGTCC
TTTTCTTAACGTATGAAGGAAGAAACTGCAGCCTTTCAGGTTCTATTCCTTCCTTTCCCC
TCAGTAGCGACCTGCATCCCGTACCTAAACCAGAAGTGGAAATCGCGAGGGTGGGAAGTC
CGGAACACCCGGCATGAGCTAGTCGGAGGTTTTAAACAGGAGTGTTTTGAGACATCAGGT
GTCTTCTCACATCATTCTTGTTCTAAGTCATTGTTGGGCTGTGTTGCGTGTGTTTTGCAG
TCTTCTCCACCCCTCTCATGATCCTCCTTGCTTTAATCTTATTTTCAACCAATCTATATG
GGCTTTTTAGGTTTTCGTTTTGTTTTGTTTCTTAGTACAAATAATGTTCTGATCCCAGTT
TTGGTGAATGTGTTAACACTGCTTTGTGAATAAAATGAGTGATCTGCTGAACAATTGCAG
TTGTAGAATTATGTTGTATGTAATGTACATATGGAGAAAGAATGTATTTTGTTCATTTTC
TTAATAAAAAGTTATATATGGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAACGCATTCTTCTGTTTACCAGCTAAGATTTAGGATGTTTGTATTTCATTAGTCC
TTTTCTTAACGTATGAAGGAAGAAACTGCAGCCTTTCAGGTTCTATTCCTTCCTTTCCCC
TCAGTAGCGACCTGCATCCCGTACCTAAACCAGAAGTGGAAATCGCGAGGGTGGGAAGTC
CGGAACACCCGGCATGAGCTAGTCGGAGGTTTTAAACAGGAGTGTTTTGAGACATCAGGT
GTCTTCTCACATCATTCTTGTTCTAAGTCATTGTTGGGCTGTGTTGCGTGTGTTTTGCAG
TCTTCTCCACCCCTCTCATGATCCTCCTTGCTTTAATCTTATTTTCAACCAATCTATATG
GGCTTTTTAGGTTTTCGTTTTGTTTTGTTTCTTAGTACAAATAATGTTCTGATCCCAGTT
TTGGTGAATGTGTTAACACTGCTTTGTGAATAAAATGAGTGATCTGCTGAACAATTGCAG
TTGTAGAATTATGTTGTATGTAATGTACATATGGAGAAAGAATGTATTTTGTTCATTTTC
TTAATAAAAAGTTATATATGGACG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-563, gnl|bosTau2|chr4 (52210213-52209671)
               

               
               3-563, gnl|Hg17|chr7 (130638082-130638642)
               

               
               3-563, gnl|Mm7|chr6 (31446595-31447109)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-563, gnl|bosTau2|chr4 (52210213-52209671)
               

               
               3-563, gnl|Hg17|chr7 (130638082-130638642)
               

               
               3-563, gnl|Mm7|chr6 (31446595-31447109)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               spc (0.113366)

	3-563, gnl\|bosTau2\|chr4 (52210213-52209671)
	3-563, gnl\|Hg17\|chr7 (130638082-130638642)
	3-563, gnl\|Mm7\|chr6 (31446595-31447109)

	fce (0.271592)
	gul (0.177588)
	lin (0.145603)
	pty (0.142714)
	che (0.136314)
	spc (0.113366)