Non-Coding RNA Search

Ss1.1-rgul0104_k5.5

Sequence:


               
               GGGCGCTCCGTGGTCCAAGCAAGGACAGTGCGGAGGGTGCGGCTGTACTGACTTAGCTAC
TGGCGCGGCCTGTGCCTTTGCTGAGGACGGCGTGCGGCGCGGAGGGAATGAAGGATGGCA
GCACGCCGCGCATTAAAGGCTGTTTTGGTGGATCTCAGTGGCACACTTCACATTGAAGAT
GCAGCTGTGCCAGGCGCACAGGAAGCTCTTAAAAGGTTACGTGCTACTTCTGTAATGATT
AGGTTTGTGACCAATACAACCAAAGAGAGCAAACAGGACCTATTGGAAAGGTTGAAAAAG
TTGGAGTTTGATATCTCTGAAGATGAAATATTCACTTCTCTGACTGCAGCCAGAAACTTG
GTAGAGCAGAAACAAGTCCGACCCATGCTGCTGGTTGATGATCGGGCCCTACCTGATTTT
AAAGGAATCGAAACAGGTGATCCTAATGCTGTGGTCGTAGGATTGGCACCAGAACATTTT
CATTATCAAATTCTGAATCAAGCATTCCGGTTACTCCTGGATGGGGCGCCTCTGATAGCA
ATCCACAAAGCCAGGTATTACAAGAGGAAAGATGGCTTAGCCCTGGGGCCCGGACCATTT
GTGACTGCTTTAGAGTATGCCACAGACTCCAAAGCCACAGTGGTAGGGAAACCAGAGAAA
ACGTTCTTTTTGGAAGCGTTGCGGGGCGCTGGCTGTGAACCTGAGGAGGCCGTCATGATA
GGAGATGACTGCAGGGATGATGTTGGTGGGGCACAGAATGTCGGCATGCTGGGCATCCTA
GTGAAAACAGGGAAATATCGAGCAGCAGATGAAGCAAAAATTAATCCACCTCCTTACTTA
ACTTGTGAGAGCTTCCCTCATGCCGTGGACCACATTCTGCAGCATCTACTGTGAATCGCT
GCCTGAATCAGAAGCACCTTGAAATGCAGCTTTCCATCCTCTGCAATGACTCAGTCCCTC
AACAACTCATTGCCGGCATAGACAGGCGCGGACCACTTGTCACGGCCACAACTTAACCCT
CTTTTATTGTACAGTAATCAGAAAGAAAGGTATTGAATTGCAGCCAGCCACTAAGCCTTG
CTAATAATCCCTCTTGTTTTACTTCGTAAAAGATGAGACCAGAGAAAGGGAAAGCTGAGA
TTGTGTGCCATCCCTCTTAAAATACTCATCAGGTTAGCAGGGCTGGAGGGAGAGTCTACT
GCAGAGTCTTGTCCGCTGTCTCCTCATTGGTCAGGTGCAGGGGTTGGGTTTCAGACTGTG
AATGAAGTCGATTACAGCTGCACTGAAGGGTGCATTAGGCTGTAGTTTTAATATCGAGTT
CAACTGAGAAATCCATCAGAAGTGCCAAGTGGAACACAGGACAGAAGAAGCAAGAGAAAT
TGTCCTTTAGCCCAAGTGATGGAGTGAATATGCTTTAACGGCTATTGAAAACTAGATTAG
CTACTGTGTTATTCCCAGCACGGGTGACTTCTTTTTCTCTTCATTAGCCAGAGATGACTA
ATTTAAATTTAGAACCTGATTTTAATTTAAAATAATATTTCCATTAATAACCTATTCATT
GCAGATACCTATTATACTGTGTAACAGTTGTTTTGGAAATTTTATGTAAAATTAAAACTA
TCAGTATTTTAAAAAAAAAAAAAATAGACATTGTTATTAACAGGAACAGTGCAGAAACTA
AAATCAAGCCTTTAATGTCTTATAGACCATGCATTTTTGAGGTTAGTGTCCACCAGAGTC
CTATTAACTGTACATTTGCAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGCTCCGTGGTCCAAGCAAGGACAGTGCGGAGGGTGCGGCTGTACTGACTTAGCTAC
TGGCGCGGCCTGTGCCTTTGCTGAGGACGGCGTGCGGCGCGGAGGGAATGAAGGATGGCA
GCACGCCGCGCATTAAAGGCTGTTTTGGTGGATCTCAGTGGCACACTTCACATTGAAGAT
GCAGCTGTGCCAGGCGCACAGGAAGCTCTTAAAAGGTTACGTGCTACTTCTGTAATGATT
AGGTTTGTGACCAATACAACCAAAGAGAGCAAACAGGACCTATTGGAAAGGTTGAAAAAG
TTGGAGTTTGATATCTCTGAAGATGAAATATTCACTTCTCTGACTGCAGCCAGAAACTTG
GTAGAGCAGAAACAAGTCCGACCCATGCTGCTGGTTGATGATCGGGCCCTACCTGATTTT
AAAGGAATCGAAACAGGTGATCCTAATGCTGTGGTCGTAGGATTGGCACCAGAACATTTT
CATTATCAAATTCTGAATCAAGCATTCCGGTTACTCCTGGATGGGGCGCCTCTGATAGCA
ATCCACAAAGCCAGGTATTACAAGAGGAAAGATGGCTTAGCCCTGGGGCCCGGACCATTT
GTGACTGCTTTAGAGTATGCCACAGACTCCAAAGCCACAGTGGTAGGGAAACCAGAGAAA
ACGTTCTTTTTGGAAGCGTTGCGGGGCGCTGGCTGTGAACCTGAGGAGGCCGTCATGATA
GGAGATGACTGCAGGGATGATGTTGGTGGGGCACAGAATGTCGGCATGCTGGGCATCCTA
GTGAAAACAGGGAAATATCGAGCAGCAGATGAAGCAAAAATTAATCCACCTCCTTACTTA
ACTTGTGAGAGCTTCCCTCATGCCGTGGACCACATTCTGCAGCATCTACTGTGAATCGCT
GCCTGAATCAGAAGCACCTTGAAATGCAGCTTTCCATCCTCTGCAATGACTCAGTCCCTC
AACAACTCATTGCCGGCATAGACAGGCGCGGACCACTTGTCACGGCCACAACTTAACCCT
CTTTTATTGTACAGTAATCAGAAAGAAAGGTATTGAATTGCAGCCAGCCACTAAGCCTTG
CTAATAATCCCTCTTGTTTTACTTCGTAAAAGATGAGACCAGAGAAAGGGAAAGCTGAGA
TTGTGTGCCATCCCTCTTAAAATACTCATCAGGTTAGCAGGGCTGGAGGGAGAGTCTACT
GCAGAGTCTTGTCCGCTGTCTCCTCATTGGTCAGGTGCAGGGGTTGGGTTTCAGACTGTG
AATGAAGTCGATTACAGCTGCACTGAAGGGTGCATTAGGCTGTAGTTTTAATATCGAGTT
CAACTGAGAAATCCATCAGAAGTGCCAAGTGGAACACAGGACAGAAGAAGCAAGAGAAAT
TGTCCTTTAGCCCAAGTGATGGAGTGAATATGCTTTAACGGCTATTGAAAACTAGATTAG
CTACTGTGTTATTCCCAGCACGGGTGACTTCTTTTTCTCTTCATTAGCCAGAGATGACTA
ATTTAAATTTAGAACCTGATTTTAATTTAAAATAATATTTCCATTAATAACCTATTCATT
GCAGATACCTATTATACTGTGTAACAGTTGTTTTGGAAATTTTATGTAAAATTAAAACTA
TCAGTATTTTAAAAAAAAAAAAAATAGACATTGTTATTAACAGGAACAGTGCAGAAACTA
AAATCAAGCCTTTAATGTCTTATAGACCATGCATTTTTGAGGTTAGTGTCCACCAGAGTC
CTATTAACTGTACATTTGCAAGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16549161|dbj|BAB70768.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16549161|dbj|BAB70768.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               214-425, gnl|bosTau2|chr24 (38523238-38523449)
               

               
               214-425, gnl|Hg17|chr18 (42915075-42914864)
               

               
               214-425, gnl|Mm7|chr18 (77236806-77237017)
               


               
               509-727, gnl|bosTau2|chr24 (38541562-38541780)
               

               
               509-727, gnl|Hg17|chr18 (42895718-42895500)
               

               
               509-727, gnl|Mm7|chr18 (77246880-77247098)
               


               
               788-1764, gnl|bosTau2|chr24 (38549288-38550271)
               

               
               788-1764, gnl|Hg17|chr18 (42889157-42888171)
               

               
               788-1764, gnl|Mm7|chr18 (77252438-77253364)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-425, gnl|bosTau2|chr24 (38523238-38523449)
               

               
               214-425, gnl|Hg17|chr18 (42915075-42914864)
               

               
               214-425, gnl|Mm7|chr18 (77236806-77237017)
               


               
               509-727, gnl|bosTau2|chr24 (38541562-38541780)
               

               
               509-727, gnl|Hg17|chr18 (42895718-42895500)
               

               
               509-727, gnl|Mm7|chr18 (77246880-77247098)
               


               
               788-1764, gnl|bosTau2|chr24 (38549288-38550271)
               

               
               788-1764, gnl|Hg17|chr18 (42889157-42888171)
               

               
               788-1764, gnl|Mm7|chr18 (77252438-77253364)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               fco (0.471624)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               ctl (0.153069)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               ctl (0.153069)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	214-425, gnl\|bosTau2\|chr24 (38523238-38523449)
	214-425, gnl\|Hg17\|chr18 (42915075-42914864)
	214-425, gnl\|Mm7\|chr18 (77236806-77237017)

	509-727, gnl\|bosTau2\|chr24 (38541562-38541780)
	509-727, gnl\|Hg17\|chr18 (42895718-42895500)
	509-727, gnl\|Mm7\|chr18 (77246880-77247098)

	788-1764, gnl\|bosTau2\|chr24 (38549288-38550271)
	788-1764, gnl\|Hg17\|chr18 (42889157-42888171)
	788-1764, gnl\|Mm7\|chr18 (77252438-77253364)

	fco (0.471624)
	tbr (0.462535)
	spc (0.453463)
	vin (0.332557)
	cki (0.330469)
	cbe (0.239234)
	tes (0.207814)
	hea (0.204499)
	gul (0.177588)
	fhi (0.169578)
	cje (0.165235)
	ctl (0.153069)
	lin (0.145603)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)