Non-Coding RNA Search

Ss1.1-rgul0104_p9.5

Sequence:


               
               AAACATTTGGCCGCGAAGCTCTCCTATGGCCCTGGAGAGAAAGATATGATTGTGATGAGA
GACAACTTTGGAATCAGACATCCTTCTGGACATCTAGAAAATAAAACAATTGATCTTGTG
GTTTACGGGGATGTCAATGGCTTTTCAGCCATGGCCAAAACTGTGGGGTTACCCACTGCT
ATGGCAGCCAAGATGTTACTTGATGGTGAAATTCAAGCTAAAGGCCTGATGGGGCCGTTT
TCAAAGGAGATCTATGGACCAATATTGGAGAGAATTAAAGCAGAAGGCATTATGTATACT
ACACAGAGCACAATCAAGCCATAATTGAGAATTATATCTTGTTTTTATCTTCCCAGGCAA
CACAGCTCTGAACTGTGGTGCAAAAACATGCTTGCTAATGTGATCTATCAAAATATAAAG
CATGATATGTCTTGGTGAAGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACATTTGGCCGCGAAGCTCTCCTATGGCCCTGGAGAGAAAGATATGATTGTGATGAGA
GACAACTTTGGAATCAGACATCCTTCTGGACATCTAGAAAATAAAACAATTGATCTTGTG
GTTTACGGGGATGTCAATGGCTTTTCAGCCATGGCCAAAACTGTGGGGTTACCCACTGCT
ATGGCAGCCAAGATGTTACTTGATGGTGAAATTCAAGCTAAAGGCCTGATGGGGCCGTTT
TCAAAGGAGATCTATGGACCAATATTGGAGAGAATTAAAGCAGAAGGCATTATGTATACT
ACACAGAGCACAATCAAGCCATAATTGAGAATTATATCTTGTTTTTATCTTCCCAGGCAA
CACAGCTCTGAACTGTGGTGCAAAAACATGCTTGCTAATGTGATCTATCAAAATATAAAG
CATGATATGTCTTGGTGAAGTCAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               32-150, - strand, RNAz p=0.996705
               

               
               64-214, + strand, RNAz p=0.887355

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-150, - strand, RNAz p=0.996705
               

               
               64-214, + strand, RNAz p=0.887355

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               25-214, gnl|bosTau2|chr4 (47794966-47795154)
               

               
               25-214, gnl|canFam2|chr14 (62920160-62920344)
               

               
               25-214, gnl|danRer3|chrNA (91279217-91279041)
               

               
               25-214, gnl|dasNov1|scaffold_58946 (5583-5398)
               

               
               25-214, gnl|echTel1|scaffold_54340 (701-517)
               

               
               25-214, gnl|fr1|chrUn (132004429-132004246)
               

               
               25-214, gnl|galGal2|chr1 (19865569-19865393)
               

               
               25-214, gnl|hg17|chr7 (121311830-121312014)
               

               
               25-214, gnl|Hg17|chr7 (121312023-121311835)
               

               
               25-214, gnl|mm7|chr6 (23015292-23015477)
               

               
               25-214, gnl|Mm7|chr6 (23015486-23015298)
               

               
               25-214, gnl|monDom2|scaffold_22 (24710272-24710057)
               

               
               25-214, gnl|oryCun1|scaffold_206421 (51408-51223)
               

               
               25-214, gnl|panTro1|chr6 (123648212-123648396)
               

               
               25-214, gnl|rheMac2|chr3 (159604508-159604692)
               

               
               25-214, gnl|rn3|chr4 (49712750-49712935)
               

               
               25-214, gnl|tetNig1|chrUn_random (26034556-26034381)
               

               
               25-214, gnl|xenTro1|scaffold_17 (3627869-3628055)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-214, gnl|bosTau2|chr4 (47794966-47795154)
               

               
               25-214, gnl|canFam2|chr14 (62920160-62920344)
               

               
               25-214, gnl|danRer3|chrNA (91279217-91279041)
               

               
               25-214, gnl|dasNov1|scaffold_58946 (5583-5398)
               

               
               25-214, gnl|echTel1|scaffold_54340 (701-517)
               

               
               25-214, gnl|fr1|chrUn (132004429-132004246)
               

               
               25-214, gnl|galGal2|chr1 (19865569-19865393)
               

               
               25-214, gnl|hg17|chr7 (121311830-121312014)
               

               
               25-214, gnl|Hg17|chr7 (121312023-121311835)
               

               
               25-214, gnl|mm7|chr6 (23015292-23015477)
               

               
               25-214, gnl|Mm7|chr6 (23015486-23015298)
               

               
               25-214, gnl|monDom2|scaffold_22 (24710272-24710057)
               

               
               25-214, gnl|oryCun1|scaffold_206421 (51408-51223)
               

               
               25-214, gnl|panTro1|chr6 (123648212-123648396)
               

               
               25-214, gnl|rheMac2|chr3 (159604508-159604692)
               

               
               25-214, gnl|rn3|chr4 (49712750-49712935)
               

               
               25-214, gnl|tetNig1|chrUn_random (26034556-26034381)
               

               
               25-214, gnl|xenTro1|scaffold_17 (3627869-3628055)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lun (0.150489)

	32-150, - strand, RNAz p=0.996705
	64-214, + strand, RNAz p=0.887355

	25-214, gnl\|bosTau2\|chr4 (47794966-47795154)
	25-214, gnl\|canFam2\|chr14 (62920160-62920344)
	25-214, gnl\|danRer3\|chrNA (91279217-91279041)
	25-214, gnl\|dasNov1\|scaffold_58946 (5583-5398)
	25-214, gnl\|echTel1\|scaffold_54340 (701-517)
	25-214, gnl\|fr1\|chrUn (132004429-132004246)
	25-214, gnl\|galGal2\|chr1 (19865569-19865393)
	25-214, gnl\|hg17\|chr7 (121311830-121312014)
	25-214, gnl\|Hg17\|chr7 (121312023-121311835)
	25-214, gnl\|mm7\|chr6 (23015292-23015477)
	25-214, gnl\|Mm7\|chr6 (23015486-23015298)
	25-214, gnl\|monDom2\|scaffold_22 (24710272-24710057)
	25-214, gnl\|oryCun1\|scaffold_206421 (51408-51223)
	25-214, gnl\|panTro1\|chr6 (123648212-123648396)
	25-214, gnl\|rheMac2\|chr3 (159604508-159604692)
	25-214, gnl\|rn3\|chr4 (49712750-49712935)
	25-214, gnl\|tetNig1\|chrUn_random (26034556-26034381)
	25-214, gnl\|xenTro1\|scaffold_17 (3627869-3628055)