Ss1.1-rgul0105_l14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATTATATACTGCATTTCAGCATACCCCGACATCAATTACTTTAACTGCTTCAAGAGTT TCCAAGGTTAATGATAAACGAAGGAAAAAAAGTGGGGAGAAAGAACAAAACATTTCCAAA TGTAAAAAAGCCTTTCGTGAAGGATCTAGGAAATCATCAAGAGTTAAGGGCTCAGCTCCA GAGATTGATCCTTCATCTGATGGTTCAAATTTTGGATGGGAGACAAAAATCAAAGCATGG ATGGATCGATATGAAGAGGCAAATAATAACCAGTATAGTGAGGGTGTTCAGAGGGAGGCA CAAAGAATAGCTCTGAGATTAGGCAATGGAACGGACAAAAAAGAGATAAATAAATCAGAT TTGAATACCAACAATTTGCTGTTCAAACCTCCTGTAGAGAGTCATATACAAAAGAATAAG AAAATTCTGAAATCTGCAAAAGATTTACCTCCCGATGCACTTATCATTGAATACAGAGGG AAGTTTATGCTAAGAGAACAGTTTGAAGCAAATGGATATTTCTTTAAGAGACCATACCCT TTTGTTTTATTCTATTCTAAATTTCATGGGCTGGAAATGTGTGTTGATGCAAGGACTTTC GGTAATGAAGCTCGGTTCATCAGGCGTTCTTGTACACCCAATGCAGAGGTGAGGCATGAA ATTGAAGATGGAACCATACATCTTTACATTTATTCTATACAAAGTATTCCAAAAGGAACT GAAATTACTATTGCCTTTGATTTTGACTATGGGAATTGCAAGTACAAGGTGGATTGTGCA TGCCTCAAAGAAAATCCAGAGTGCCCTGTTCTAAAACGTAGTTCTGAATCCATGGAAAAT ATCAATAGCGGTTATGAAACCAGAAGAAAAAAAGGAAAAAAAGAAAAGGATATTTCAAAA GAAAAAGATACACAAAATCAGAATATTACTTTGGATTGTGAAGGAACAGTGAACAAAATG AAGAGCCCAGAAACTAAACAGAGAAAGCTTTCTCCACTGAGACTCTCAGTATCAAATAAT CAGGAACCAGATTTTATTGATGATATAGAAGAAAAAACTCCCATTAGCAATGAAGTAGAA ATGGAGTCAGAAGAACAAATTGCAGAAAGGAAAAGGAAGATGGTAAGTTGGGAGGCCAGG AACAGCTTCATGCTGTCACTAGGATTTAGTCACCCTTCCCAGAGCTCTTGTTGATGCCTT AGGAGGGCCTTTACTGTGTTCTTTATTTCAAGTTAGCAAACATGATGTGTCACTGAGCAT TTCTATTTGGCTTTGTCATTACCATTGAAAAAACTGCCACTAATCTTTTGTATTTTTATT GTGTGTTCATTAGGCAATCTAGGATTTGTGACATTTAAGAATTAAATTTTTTTTCTAAGC TGAATACTATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATTATATACTGCATTTCAGCATACCCCGACATCAATTACTTTAACTGCTTCAAGAGTT TCCAAGGTTAATGATAAACGAAGGAAAAAAAGTGGGGAGAAAGAACAAAACATTTCCAAA TGTAAAAAAGCCTTTCGTGAAGGATCTAGGAAATCATCAAGAGTTAAGGGCTCAGCTCCA GAGATTGATCCTTCATCTGATGGTTCAAATTTTGGATGGGAGACAAAAATCAAAGCATGG ATGGATCGATATGAAGAGGCAAATAATAACCAGTATAGTGAGGGTGTTCAGAGGGAGGCA CAAAGAATAGCTCTGAGATTAGGCAATGGAACGGACAAAAAAGAGATAAATAAATCAGAT TTGAATACCAACAATTTGCTGTTCAAACCTCCTGTAGAGAGTCATATACAAAAGAATAAG AAAATTCTGAAATCTGCAAAAGATTTACCTCCCGATGCACTTATCATTGAATACAGAGGG AAGTTTATGCTAAGAGAACAGTTTGAAGCAAATGGATATTTCTTTAAGAGACCATACCCT TTTGTTTTATTCTATTCTAAATTTCATGGGCTGGAAATGTGTGTTGATGCAAGGACTTTC GGTAATGAAGCTCGGTTCATCAGGCGTTCTTGTACACCCAATGCAGAGGTGAGGCATGAA ATTGAAGATGGAACCATACATCTTTACATTTATTCTATACAAAGTATTCCAAAAGGAACT GAAATTACTATTGCCTTTGATTTTGACTATGGGAATTGCAAGTACAAGGTGGATTGTGCA TGCCTCAAAGAAAATCCAGAGTGCCCTGTTCTAAAACGTAGTTCTGAATCCATGGAAAAT ATCAATAGCGGTTATGAAACCAGAAGAAAAAAAGGAAAAAAAGAAAAGGATATTTCAAAA GAAAAAGATACACAAAATCAGAATATTACTTTGGATTGTGAAGGAACAGTGAACAAAATG AAGAGCCCAGAAACTAAACAGAGAAAGCTTTCTCCACTGAGACTCTCAGTATCAAATAAT CAGGAACCAGATTTTATTGATGATATAGAAGAAAAAACTCCCATTAGCAATGAAGTAGAA ATGGAGTCAGAAGAACAAATTGCAGAAAGGAAAAGGAAGATGGTAAGTTGGGAGGCCAGG AACAGCTTCATGCTGTCACTAGGATTTAGTCACCCTTCCCAGAGCTCTTGTTGATGCCTT AGGAGGGCCTTTACTGTGTTCTTTATTTCAAGTTAGCAAACATGATGTGTCACTGAGCAT TTCTATTTGGCTTTGTCATTACCATTGAAAAAACTGCCACTAATCTTTTGTATTTTTATT GTGTGTTCATTAGGCAATCTAGGATTTGTGACATTTAAGAATTAAATTTTTTTTCTAAGC TGAATACTATTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-130, gnl|bosTau2|chr4 (22230554-22230683) | |
| 1-130, gnl|Hg17|chr7 (104309085-104309214) | |
| 1-130, gnl|Mm7|chr5 (22514018-22514147) | |
| 161-408, gnl|bosTau2|chr4 (22238202-22238446) | |
| 161-408, gnl|Hg17|chr7 (104311353-104311600) | |
| 161-408, gnl|Mm7|chr5 (22518990-22519244) | |
| 529-653, gnl|bosTau2|chr22 (14570369-14570245) | |
| 529-653, gnl|canFam2|chr20 (11718575-11718438) | |
| 529-653, gnl|danRer3|chrUn (18935413-18935265) | |
| 529-653, gnl|echTel1|scaffold_228526 (831-687) | |
| 529-653, gnl|fr1|chrUn (215297903-215297774) | |
| 529-653, gnl|galGal2|chr12 (11409349-11409489) | |
| 529-653, gnl|hg17|chr3 (9458801-9458947) | |
| 529-653, gnl|Hg17|chr3 (9458810-9458934) | |
| 529-653, gnl|loxAfr1|scaffold_5529 (19363-19507) | |
| 529-653, gnl|mm7|chr6 (113276922-113277068) | |
| 529-653, gnl|Mm7|chr6 (113276931-113277055) | |
| 529-653, gnl|monDom2|scaffold_5 (36301232-36301378) | |
| 529-653, gnl|oryCun1|scaffold_206156 (46341-46487) | |
| 529-653, gnl|panTro1|chr2 (9832533-9832679) | |
| 529-653, gnl|rheMac2|chr2 (51550079-51549933) | |
| 529-653, gnl|rn3|chr4 (149237218-149237364) | |
| 529-653, gnl|tetNig1|chrUn_random (4972786-4972638) | |
| 529-653, gnl|xenTro1|scaffold_386 (778449-778574) | |
| 760-1039, gnl|bosTau2|chr4 (22245715-22245994) | |
| 760-1039, gnl|canFam2|chr18 (18250658-18250359) | |
| 760-1039, gnl|danRer3|chr4 (28509768-28510035) | |
| 760-1039, gnl|dasNov1|scaffold_273066 (399-698) | |
| 760-1039, gnl|fr1|chrUn (273376455-273376172) | |
| 760-1039, gnl|galGal2|chr1 (9890768-9890464) | |
| 760-1039, gnl|hg17|chr7 (104324375-104324675) | |
| 760-1039, gnl|Hg17|chr7 (104324408-104324683) | |
| 760-1039, gnl|loxAfr1|scaffold_72514 (3480-3772) | |
| 760-1039, gnl|mm7|chr5 (22525813-22526108) | |
| 760-1039, gnl|Mm7|chr5 (22525841-22526110) | |
| 760-1039, gnl|monDom2|scaffold_30 (31333634-31333941) | |
| 760-1039, gnl|oryCun1|scaffold_137492 (20489-20192) | |
| 760-1039, gnl|panTro1|chr6 (106159084-106159384) | |
| 760-1039, gnl|rheMac2|chr3 (142492131-142492431) | |
| 760-1039, gnl|rn3|chr4 (7061360-7061064) | |
| 760-1039, gnl|tetNig1|chr19 (1274196-1273929) | |
| 760-1039, gnl|xenTro1|scaffold_61 (2449346-2449641) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-130, gnl|bosTau2|chr4 (22230554-22230683) | |
| 1-130, gnl|Hg17|chr7 (104309085-104309214) | |
| 1-130, gnl|Mm7|chr5 (22514018-22514147) | |
| 161-408, gnl|bosTau2|chr4 (22238202-22238446) | |
| 161-408, gnl|Hg17|chr7 (104311353-104311600) | |
| 161-408, gnl|Mm7|chr5 (22518990-22519244) | |
| 529-653, gnl|bosTau2|chr22 (14570369-14570245) | |
| 529-653, gnl|canFam2|chr20 (11718575-11718438) | |
| 529-653, gnl|danRer3|chrUn (18935413-18935265) | |
| 529-653, gnl|echTel1|scaffold_228526 (831-687) | |
| 529-653, gnl|fr1|chrUn (215297903-215297774) | |
| 529-653, gnl|galGal2|chr12 (11409349-11409489) | |
| 529-653, gnl|hg17|chr3 (9458801-9458947) | |
| 529-653, gnl|Hg17|chr3 (9458810-9458934) | |
| 529-653, gnl|loxAfr1|scaffold_5529 (19363-19507) | |
| 529-653, gnl|mm7|chr6 (113276922-113277068) | |
| 529-653, gnl|Mm7|chr6 (113276931-113277055) | |
| 529-653, gnl|monDom2|scaffold_5 (36301232-36301378) | |
| 529-653, gnl|oryCun1|scaffold_206156 (46341-46487) | |
| 529-653, gnl|panTro1|chr2 (9832533-9832679) | |
| 529-653, gnl|rheMac2|chr2 (51550079-51549933) | |
| 529-653, gnl|rn3|chr4 (149237218-149237364) | |
| 529-653, gnl|tetNig1|chrUn_random (4972786-4972638) | |
| 529-653, gnl|xenTro1|scaffold_386 (778449-778574) | |
| 760-1039, gnl|bosTau2|chr4 (22245715-22245994) | |
| 760-1039, gnl|canFam2|chr18 (18250658-18250359) | |
| 760-1039, gnl|danRer3|chr4 (28509768-28510035) | |
| 760-1039, gnl|dasNov1|scaffold_273066 (399-698) | |
| 760-1039, gnl|fr1|chrUn (273376455-273376172) | |
| 760-1039, gnl|galGal2|chr1 (9890768-9890464) | |
| 760-1039, gnl|hg17|chr7 (104324375-104324675) | |
| 760-1039, gnl|Hg17|chr7 (104324408-104324683) | |
| 760-1039, gnl|loxAfr1|scaffold_72514 (3480-3772) | |
| 760-1039, gnl|mm7|chr5 (22525813-22526108) | |
| 760-1039, gnl|Mm7|chr5 (22525841-22526110) | |
| 760-1039, gnl|monDom2|scaffold_30 (31333634-31333941) | |
| 760-1039, gnl|oryCun1|scaffold_137492 (20489-20192) | |
| 760-1039, gnl|panTro1|chr6 (106159084-106159384) | |
| 760-1039, gnl|rheMac2|chr3 (142492131-142492431) | |
| 760-1039, gnl|rn3|chr4 (7061360-7061064) | |
| 760-1039, gnl|tetNig1|chr19 (1274196-1273929) | |
| 760-1039, gnl|xenTro1|scaffold_61 (2449346-2449641) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| isp (0.300752) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| thg (0.126791) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.300752) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| thg (0.126791) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |