Non-Coding RNA Search

Ss1.1-rgul0105_o2.5

Sequence:


               
               GGGCAGCCCATTGCTCCATCTTTAAAATACACACGAGGTATGTTATTTGTCTACTCCCAG
AATTTTTTTCAACTTTCATTTTCCCCCACCAATTTCAACATCCTGAAACCAATAAAGTTA
AAGTAAAGGTGAAGTACACCCCATTCCCTGCTACGGCACACTACACCATAGCTTCCTAAA
AGATGATTCTTTTTTTAAAGGCCTTAACCTTCGCAACACTTTATTAACCAAGACGACAAA
TAAAAATTTTTTCATTGAGGTAGTTTTTTCCCCTGAAGCACGTTAAAGTCTCGAAAGTTC
ATATTATTAAAAATTGCATAATAAAATTTTTAGGAGGAAGAGCAAGTGAAAGGCAAGCTA
TAGAATAATTTGACCATATATGTATATTTTGCACATGCATATGCGGATAAATGTATCTTA
AAAGATGCTATTGTTTTATGTTTCCTCTTCAGCCACTGGCTGTGATTTTAATTGTGCTGG
AGGATCTTCATTAGTATTAACACATGGGGAGATTTCACAAAGCTGCTTCATTAGGAAAAA
AAAAAGCTTGGCAGACTAGGTCTTTTTGCATGCACTGAGAATGTCAGCCTTACCTCGGTC
ATTTGTAACATAATAAGTGCAAGTACAATGATTGCAAAGCAGGAGCACTGGGGGAAGGGC
AGAAATACTGCCTGTCTAATAGGGATATCTGAAAAGAAGGCTGCTCATTACATAGTAAAA
TGTATGCTAAAAATTAGTGAAGATGATGTCTCAGGAGATTGATGCTAAATAAATTAATGT
GCTGATATTTTTTAATTATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGCCCATTGCTCCATCTTTAAAATACACACGAGGTATGTTATTTGTCTACTCCCAG
AATTTTTTTCAACTTTCATTTTCCCCCACCAATTTCAACATCCTGAAACCAATAAAGTTA
AAGTAAAGGTGAAGTACACCCCATTCCCTGCTACGGCACACTACACCATAGCTTCCTAAA
AGATGATTCTTTTTTTAAAGGCCTTAACCTTCGCAACACTTTATTAACCAAGACGACAAA
TAAAAATTTTTTCATTGAGGTAGTTTTTTCCCCTGAAGCACGTTAAAGTCTCGAAAGTTC
ATATTATTAAAAATTGCATAATAAAATTTTTAGGAGGAAGAGCAAGTGAAAGGCAAGCTA
TAGAATAATTTGACCATATATGTATATTTTGCACATGCATATGCGGATAAATGTATCTTA
AAAGATGCTATTGTTTTATGTTTCCTCTTCAGCCACTGGCTGTGATTTTAATTGTGCTGG
AGGATCTTCATTAGTATTAACACATGGGGAGATTTCACAAAGCTGCTTCATTAGGAAAAA
AAAAAGCTTGGCAGACTAGGTCTTTTTGCATGCACTGAGAATGTCAGCCTTACCTCGGTC
ATTTGTAACATAATAAGTGCAAGTACAATGATTGCAAAGCAGGAGCACTGGGGGAAGGGC
AGAAATACTGCCTGTCTAATAGGGATATCTGAAAAGAAGGCTGCTCATTACATAGTAAAA
TGTATGCTAAAAATTAGTGAAGATGATGTCTCAGGAGATTGATGCTAAATAAATTAATGT
GCTGATATTTTTTAATTATTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               369-488, - strand, RNAz p=0.873779
               

               
               607-766, - strand, RNAz p=0.984976

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-488, - strand, RNAz p=0.873779
               

               
               607-766, - strand, RNAz p=0.984976

Similar Transcript(s): 4 entry(ies)

More info

Similar Transcript(s): 4 entry(ies)

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               607-766, nq98d06.s1 NCI_CGAP_Co10 Homo sapiens cDNA clone IMAGE 
(gb|AA923638.1|), blast E-value=0, identity=97.5% 
               

               
               607-766, qt75a02.x1 NCI_CGAP_Eso2 Homo sapiens cDNA clone IMAGE 
(gb|AI355120.1|), blast E-value=0, identity=98.12% 
               

               
               607-766, UI-CF-EC1-abu-g-02-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone 
(gb|BM970012.1|), blast E-value=0, identity=98.12% 
               

               
               607-766, 756929 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB532468.1|), 
blast E-value=0, identity=98.75%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               607-766, nq98d06.s1 NCI_CGAP_Co10 Homo sapiens cDNA clone IMAGE 
(gb|AA923638.1|), blast E-value=0, identity=97.5% 
               

               
               607-766, qt75a02.x1 NCI_CGAP_Eso2 Homo sapiens cDNA clone IMAGE 
(gb|AI355120.1|), blast E-value=0, identity=98.12% 
               

               
               607-766, UI-CF-EC1-abu-g-02-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone 
(gb|BM970012.1|), blast E-value=0, identity=98.12% 
               

               
               607-766, 756929 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB532468.1|), 
blast E-value=0, identity=98.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-801, gnl|bosTau2|chr23 (14823451-14822710)
               

               
               68-801, gnl|Hg17|chr2 (160299328-160300060)
               

               
               68-801, gnl|Mm7|chr2 (60057043-60057760)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-801, gnl|bosTau2|chr23 (14823451-14822710)
               

               
               68-801, gnl|Hg17|chr2 (160299328-160300060)
               

               
               68-801, gnl|Mm7|chr2 (60057043-60057760)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               pty (0.142714)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               pty (0.142714)

	369-488, - strand, RNAz p=0.873779
	607-766, - strand, RNAz p=0.984976

	607-766, nq98d06.s1 NCI_CGAP_Co10 Homo sapiens cDNA clone IMAGE (gb\|AA923638.1\|), blast E-value=0, identity=97.5%
	607-766, qt75a02.x1 NCI_CGAP_Eso2 Homo sapiens cDNA clone IMAGE (gb\|AI355120.1\|), blast E-value=0, identity=98.12%
	607-766, UI-CF-EC1-abu-g-02-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone (gb\|BM970012.1\|), blast E-value=0, identity=98.12%
	607-766, 756929 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB532468.1\|), blast E-value=0, identity=98.75%

	68-801, gnl\|bosTau2\|chr23 (14823451-14822710)
	68-801, gnl\|Hg17\|chr2 (160299328-160300060)
	68-801, gnl\|Mm7\|chr2 (60057043-60057760)