Non-Coding RNA Search

Ss1.1-rgul0106_l1.5

Sequence:


               
               CTGTTCACAAAGACCCTCTGACTAAAGCATCTGCCTGACCCAATGCCCTGTCAAATTCCC
TGTTGGCGCTGTCATGCAGTGAGGTCTTGCCATCTGAAGAACACTCTTCACCAATCAGTT
TTTCTCCTTTGGGGCCATTTCTGTCCCAGGATAGCAACAGATGGCCTCAGGCTCTGCTCC
AATGGGCTCTCTCCTTGTTTCGTAGCTCACCAGCAGCAGAAAAGTCTACACACTTGTGAA
AGTGGCAGGCTTCTTAGCTGGAGTTGTTACTGCAGCCTGGCCTGTAGGTTTGACCCTCAG
ACAGTTCTTGGTTATGATGATGAATGGCCCCCAGTTCTGGTGTCCTTCCCAACTTGCCCC
AGAAGGACCAGCCTTCTCCCACTGTGGCAGCTGTCCAGGAATGGGGAGGCAGCTCTGTTT
TTGCTTTGTATTTATTCCCCCAAATGTCCTGGGGAGCATTTGCAAATTAGGTGCAATAAA
TAAGCTAGACTATCTAAAGATAGATTTTTTAAAAATAAGCTTTCAATGTTTCTTGGAAGA
TGTGAAGCATTTGGGCAGGTTTGTTTAGTTTGTTAAGTATGCTTGTTATAGGAGAGCTGG
TGAGAAATAAGGAAGTTATGTAGTTCTCCAGAAATGAAAACAGTTTCAGAGTCAAGGTAG
AGTTTGTTTTATCTCTAAGATTTAATTTTAACAGTGGCAGAACATTACTCTCTCAATGTT
TTTTAAAGATGTAAAGTCTGAACTGCAAAAAGACTGTTTGTGGGTTTGATCTCTGCATAT
AATTTGCTTTTTAAAAACAAGCATTACTTGTAGTCACTTGGACGTTAAATGGCATATATG
TTTGTAAACCAAAAAAAGGGTCTGTTCACTTTGCAGAAATCCCATTTGCTAGGTCTTCCC
TCTCAGTGGACAGTGAGTGAAAATCCCAGTGTCATGTCAAATTCCTCAACTGGGCGCAGT
TTGCCGGAGTAAGCATCAGAGTAAGCATCAGAGCTATCTGCTCTGGGAAGTCCTGATGTC
CTTGTCTCTACAAAAATGATCCCTGAAGTTGAGGATAAGAAGTCACACATCTAAAGAGAT
CTCCCAGGGTCATCCCAAGACAATCTGCCAGTGTATCTTCACTCCCTGAAGTGGGACACT
TCCCGAAGAGCTGTGCTGATGGGCAGCTTTTCCTTGTTATGGTTGTAAAGCACTGCAGCC
CAGGCTGTAAAGCAGTGGATGTTTTACAGTCTCGTTTATCACTTCCTAGAGTCGGCTGAC
CCTATGAGGACTCCGAGAAGGCAGCTGTGATGGTGGTGGGTCACTCTTACTTCACTGTGA
ATGTAGAACTGCAGACTCATCTTCATTTTTGTGCCTAAAAGTGCCTTGTTGAGAAGTTTC
CACAGATTTTTTAAAAATGCCTATTTTTTTGTACACAAAGTTAAAGGGGAAATGCACTTT
ACAATCACAAGAATGGCTGTCTTTTGTGTGGTATAAGAATGGTTTGTTTGGATATCTTAC
TACAAAAATGTAATAAAGGCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTCACAAAGACCCTCTGACTAAAGCATCTGCCTGACCCAATGCCCTGTCAAATTCCC
TGTTGGCGCTGTCATGCAGTGAGGTCTTGCCATCTGAAGAACACTCTTCACCAATCAGTT
TTTCTCCTTTGGGGCCATTTCTGTCCCAGGATAGCAACAGATGGCCTCAGGCTCTGCTCC
AATGGGCTCTCTCCTTGTTTCGTAGCTCACCAGCAGCAGAAAAGTCTACACACTTGTGAA
AGTGGCAGGCTTCTTAGCTGGAGTTGTTACTGCAGCCTGGCCTGTAGGTTTGACCCTCAG
ACAGTTCTTGGTTATGATGATGAATGGCCCCCAGTTCTGGTGTCCTTCCCAACTTGCCCC
AGAAGGACCAGCCTTCTCCCACTGTGGCAGCTGTCCAGGAATGGGGAGGCAGCTCTGTTT
TTGCTTTGTATTTATTCCCCCAAATGTCCTGGGGAGCATTTGCAAATTAGGTGCAATAAA
TAAGCTAGACTATCTAAAGATAGATTTTTTAAAAATAAGCTTTCAATGTTTCTTGGAAGA
TGTGAAGCATTTGGGCAGGTTTGTTTAGTTTGTTAAGTATGCTTGTTATAGGAGAGCTGG
TGAGAAATAAGGAAGTTATGTAGTTCTCCAGAAATGAAAACAGTTTCAGAGTCAAGGTAG
AGTTTGTTTTATCTCTAAGATTTAATTTTAACAGTGGCAGAACATTACTCTCTCAATGTT
TTTTAAAGATGTAAAGTCTGAACTGCAAAAAGACTGTTTGTGGGTTTGATCTCTGCATAT
AATTTGCTTTTTAAAAACAAGCATTACTTGTAGTCACTTGGACGTTAAATGGCATATATG
TTTGTAAACCAAAAAAAGGGTCTGTTCACTTTGCAGAAATCCCATTTGCTAGGTCTTCCC
TCTCAGTGGACAGTGAGTGAAAATCCCAGTGTCATGTCAAATTCCTCAACTGGGCGCAGT
TTGCCGGAGTAAGCATCAGAGTAAGCATCAGAGCTATCTGCTCTGGGAAGTCCTGATGTC
CTTGTCTCTACAAAAATGATCCCTGAAGTTGAGGATAAGAAGTCACACATCTAAAGAGAT
CTCCCAGGGTCATCCCAAGACAATCTGCCAGTGTATCTTCACTCCCTGAAGTGGGACACT
TCCCGAAGAGCTGTGCTGATGGGCAGCTTTTCCTTGTTATGGTTGTAAAGCACTGCAGCC
CAGGCTGTAAAGCAGTGGATGTTTTACAGTCTCGTTTATCACTTCCTAGAGTCGGCTGAC
CCTATGAGGACTCCGAGAAGGCAGCTGTGATGGTGGTGGGTCACTCTTACTTCACTGTGA
ATGTAGAACTGCAGACTCATCTTCATTTTTGTGCCTAAAAGTGCCTTGTTGAGAAGTTTC
CACAGATTTTTTAAAAATGCCTATTTTTTTGTACACAAAGTTAAAGGGGAAATGCACTTT
ACAATCACAAGAATGGCTGTCTTTTGTGTGGTATAAGAATGGTTTGTTTGGATATCTTAC
TACAAAAATGTAATAAAGGCAGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1132-1238, + strand, RNAz p=0.915111

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1132-1238, + strand, RNAz p=0.915111

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               123-1524, gnl|bosTau2|chr27 (14991190-14992581)
               

               
               123-1524, gnl|Hg17|chr8 (9032541-9031184)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1524, gnl|bosTau2|chr27 (14991190-14992581)
               

               
               123-1524, gnl|Hg17|chr8 (9032541-9031184)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	123-1524, gnl\|bosTau2\|chr27 (14991190-14992581)
	123-1524, gnl\|Hg17\|chr8 (9032541-9031184)

	cbl (0.229595)
	nms (0.213858)
	mas (0.210305)
	sto (0.179824)
	gul (0.177588)
	tbr (0.154178)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)