Non-Coding RNA Search

Ss1.1-rgul0106_m13.5

Sequence:


               
               CCTGAAGGCTCACCTTCAAAATCACCATCCAAGAAAAAGAAGAAATTCCGCACTCCTTCT
TTTCTGAAAAAGAACAAAAAAAAGGAGAAAGTTGAAGCCTAAATAAAGTCTTTTTATAAT
TATTATTACAATGTGACGTTGCACATTTTAAAACCGCATTTAAGTTGATCGTTAATATGC
AGTGGTAGATCAGATTGGGGGTATGTAGCAAACTGGACTTTAAGAACTGGAAAGAGGTTT
TACTAAAAGAAAAGCATTATGAAAAATACTTTCAAATTCATCTCACATTTTATATGTCCA
AAAGAGGTTTTGAATTTTTAAACAATTGCTAGTTTTGACTAGCTCTGCCCTCATGAAGTA
TCATTATAATCGCCACAGATATCTGTCTGAATTACTTCAGGCCTTCTACATACTTGTTGG
AAATAAATTACCAGTGAACAAGCAAGAAAATTTTTATTTCTCAACACCTGTTTCACTTGG
TAATCAGATTATAGTTTTTTATCATGATTATTGACTGTACCTTTTGGGTTCCCATTGTTT
CAATGGGCATTAACAGAATGCTTTAAAAGCGTCTAAGATAAGAATCTATAGCATTAGTAT
ACACTGGCACATATTTTTTTGAAAGTTAAGAAAAGATTCAATTGGAATTTTATTCATAGT
ATAAAATCTCTTCACCTGAAGTAACTTTGTTTGCCAAAAAAGGGTCATTTTAGTAAACTA
TAATTTTTGAAAAATCCTTTTATATTAGTTTAGAAAGCCCCTTATTTTTCAACAAAGGGG
ATTTTATACACATAACATGGGTTATTTAGTTTAACTCTGGCAAAAATGATTTTTGTATGT
TGAGATGTTTGTATACCATTCAGTATAAAAGTGTCATAAGCATATTAGCCAATCATTTAA
CCGTAGAGCATATTTGAGGCTGCTTGGTACTAAGCATACTTAAATATAATTAAAGAATCC
AGGGACTTGGTATCAAAAGGAGATTAGAGCATTTAAAAGCATAACAAGATTCATATTTGA
ACCTTATAATGTATTTTTCTCTTAGTATTGCTAGTGAATGAAGAAGCCCTCATAAGGTAA
CCAAATGAAAAGGAAAAGAATGAGAGAGAAAGTGAAGAATTAAGGGAACAAAAGAAGTGT
CATGAGAAGAATCTTAGTTTGATAATGATTTATAGTCATGATATGATTTGAAGTGTAATT
TATTGGAAGCTTGTCCCAAATCTCTAAAATTCTGTTTCCCTGCCCAAGTCATTATATTTC
TCAGTTGATATTTGAGTTTTAAAGGGGTCAGATTCTTTTAACTTACGTATCTTTAGAAGG
CAGCACAAGAAGAAATCAGTGGGGCTAATCCCCCTCCCCCACCCTGAGAAAACTACCACT
TCTTGATTTTTACAGATTTTTCTTGTCTTTTCAGTTTAACTTTCTTTCTAATGTAAATAC
AAATTTAAACCTAGGCTTAATATAGTTTTTTTTTTTTTCCCCTTCACCCAAGTGATGTCA
CAAATCAATGTAAAATCAATGATCCAAAACAGTCAGTGGGTAAAAATCATCCAAAGTATT
TCTGGAGGGTGAGTTTGTGTGTAAAAAATTACATTGATTATAAGTGTGTTCTGGGGCTGG
TTCTGTTTGACCGTGTGTGTATGATGATGCAAAGTTGAAACAGAGCCTAGAAAGTTCATT
CTAGATCTCACTAACTACTGGAATCAGTGTTTTAATCTCTTAGTGGAAACTTTCAGTTGC
TTAATTCTGTATTTGAGGATTCTTTTATGTTCTACATCATTTATGTTGTATTACAACGTA
CGTAGAAACAGTAACCTGTGAACTCTGCTTTTCCATAACTTTTTAAAAATATATATATAT
CTTAAATGAATGCAATGTGCATAAATATTTTTTAAACACAACAGTGAACTATTTGCACCT
TTTGCTAATGCCTCTATTTACTTGCTTTGGCATAAAGAATGAGCCAATGAACCTCTGTGT
CCTGTGGAAAATGTATAAATGTTATCTGATATTGCTCTTAGATGTAATGCTGATTAATGT
AAAATCACAAATAAACAGTATTTTAAATAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAAGGCTCACCTTCAAAATCACCATCCAAGAAAAAGAAGAAATTCCGCACTCCTTCT
TTTCTGAAAAAGAACAAAAAAAAGGAGAAAGTTGAAGCCTAAATAAAGTCTTTTTATAAT
TATTATTACAATGTGACGTTGCACATTTTAAAACCGCATTTAAGTTGATCGTTAATATGC
AGTGGTAGATCAGATTGGGGGTATGTAGCAAACTGGACTTTAAGAACTGGAAAGAGGTTT
TACTAAAAGAAAAGCATTATGAAAAATACTTTCAAATTCATCTCACATTTTATATGTCCA
AAAGAGGTTTTGAATTTTTAAACAATTGCTAGTTTTGACTAGCTCTGCCCTCATGAAGTA
TCATTATAATCGCCACAGATATCTGTCTGAATTACTTCAGGCCTTCTACATACTTGTTGG
AAATAAATTACCAGTGAACAAGCAAGAAAATTTTTATTTCTCAACACCTGTTTCACTTGG
TAATCAGATTATAGTTTTTTATCATGATTATTGACTGTACCTTTTGGGTTCCCATTGTTT
CAATGGGCATTAACAGAATGCTTTAAAAGCGTCTAAGATAAGAATCTATAGCATTAGTAT
ACACTGGCACATATTTTTTTGAAAGTTAAGAAAAGATTCAATTGGAATTTTATTCATAGT
ATAAAATCTCTTCACCTGAAGTAACTTTGTTTGCCAAAAAAGGGTCATTTTAGTAAACTA
TAATTTTTGAAAAATCCTTTTATATTAGTTTAGAAAGCCCCTTATTTTTCAACAAAGGGG
ATTTTATACACATAACATGGGTTATTTAGTTTAACTCTGGCAAAAATGATTTTTGTATGT
TGAGATGTTTGTATACCATTCAGTATAAAAGTGTCATAAGCATATTAGCCAATCATTTAA
CCGTAGAGCATATTTGAGGCTGCTTGGTACTAAGCATACTTAAATATAATTAAAGAATCC
AGGGACTTGGTATCAAAAGGAGATTAGAGCATTTAAAAGCATAACAAGATTCATATTTGA
ACCTTATAATGTATTTTTCTCTTAGTATTGCTAGTGAATGAAGAAGCCCTCATAAGGTAA
CCAAATGAAAAGGAAAAGAATGAGAGAGAAAGTGAAGAATTAAGGGAACAAAAGAAGTGT
CATGAGAAGAATCTTAGTTTGATAATGATTTATAGTCATGATATGATTTGAAGTGTAATT
TATTGGAAGCTTGTCCCAAATCTCTAAAATTCTGTTTCCCTGCCCAAGTCATTATATTTC
TCAGTTGATATTTGAGTTTTAAAGGGGTCAGATTCTTTTAACTTACGTATCTTTAGAAGG
CAGCACAAGAAGAAATCAGTGGGGCTAATCCCCCTCCCCCACCCTGAGAAAACTACCACT
TCTTGATTTTTACAGATTTTTCTTGTCTTTTCAGTTTAACTTTCTTTCTAATGTAAATAC
AAATTTAAACCTAGGCTTAATATAGTTTTTTTTTTTTTCCCCTTCACCCAAGTGATGTCA
CAAATCAATGTAAAATCAATGATCCAAAACAGTCAGTGGGTAAAAATCATCCAAAGTATT
TCTGGAGGGTGAGTTTGTGTGTAAAAAATTACATTGATTATAAGTGTGTTCTGGGGCTGG
TTCTGTTTGACCGTGTGTGTATGATGATGCAAAGTTGAAACAGAGCCTAGAAAGTTCATT
CTAGATCTCACTAACTACTGGAATCAGTGTTTTAATCTCTTAGTGGAAACTTTCAGTTGC
TTAATTCTGTATTTGAGGATTCTTTTATGTTCTACATCATTTATGTTGTATTACAACGTA
CGTAGAAACAGTAACCTGTGAACTCTGCTTTTCCATAACTTTTTAAAAATATATATATAT
CTTAAATGAATGCAATGTGCATAAATATTTTTTAAACACAACAGTGAACTATTTGCACCT
TTTGCTAATGCCTCTATTTACTTGCTTTGGCATAAAGAATGAGCCAATGAACCTCTGTGT
CCTGTGGAAAATGTATAAATGTTATCTGATATTGCTCTTAGATGTAATGCTGATTAATGT
AAAATCACAAATAAACAGTATTTTAAATAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 6 entry(ies)

More info

Predicted RNA structure(s): 6 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.600681
               

               
               314-540, - strand, RNAz p=0.975697
               

               
               723-832, - strand, RNAz p=0.581032
               

               
               992-1110, - strand, RNAz p=0.954964
               

               
               1568-1683, - strand, RNAz p=0.943365
               

               
               1724-1842, + strand, RNAz p=0.85182

Predicted RNA structure(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.600681
               

               
               314-540, - strand, RNAz p=0.975697
               

               
               723-832, - strand, RNAz p=0.581032
               

               
               992-1110, - strand, RNAz p=0.954964
               

               
               1568-1683, - strand, RNAz p=0.943365
               

               
               1724-1842, + strand, RNAz p=0.85182

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_001121, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001121, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2071, gnl|bosTau2|chr26 (19604910-19602819)
               

               
               1-2071, gnl|Hg17|chr10 (111883265-111885313)
               

               
               1-2071, gnl|Mm7|chr19 (53145823-53147721)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2071, gnl|bosTau2|chr26 (19604910-19602819)
               

               
               1-2071, gnl|Hg17|chr10 (111883265-111885313)
               

               
               1-2071, gnl|Mm7|chr19 (53145823-53147721)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

Help | Less info


               
               cbe (1.19617)
               

               
               fco (0.78604)
               

               
               eye (0.682012)
               

               
               aor (0.585823)
               

               
               liv (0.585137)
               

               
               fce (0.543183)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               cbl (0.45919)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.19617)
               

               
               fco (0.78604)
               

               
               eye (0.682012)
               

               
               aor (0.585823)
               

               
               liv (0.585137)
               

               
               fce (0.543183)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               cbl (0.45919)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

	1-119, - strand, RNAz p=0.600681
	314-540, - strand, RNAz p=0.975697
	723-832, - strand, RNAz p=0.581032
	992-1110, - strand, RNAz p=0.954964
	1568-1683, - strand, RNAz p=0.943365
	1724-1842, + strand, RNAz p=0.85182

	1-2071, gnl\|bosTau2\|chr26 (19604910-19602819)
	1-2071, gnl\|Hg17\|chr10 (111883265-111885313)
	1-2071, gnl\|Mm7\|chr19 (53145823-53147721)

	cbe (1.19617)
	fco (0.78604)
	eye (0.682012)
	aor (0.585823)
	liv (0.585137)
	fce (0.543183)
	sin (0.524843)
	kid (0.518941)
	cbl (0.45919)
	fbs (0.350693)
	rec (0.346141)
	mga (0.32041)
	cty (0.31224)
	fat (0.294855)
	lin (0.291206)
	ret (0.257467)
	tra (0.246184)
	eru (0.240096)
	mgp (0.230681)
	spc (0.226732)
	hea (0.204499)
	nlu (0.191681)
	gul (0.177588)
	ill (0.175593)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	ute (0.132784)
	eje (0.0988338)