Non-Coding RNA Search

Ss1.1-rgul0106_o21.5.5

Sequence:


               
               GCCGAAGAAAGACAAGAAGCCTAAGAAGTCAACCTGGAAGTTTAATTTGGCCGGCCTCCA
ACATGGCGCCGAAGAAAGACAAGAAGCCTAAGAAGTCAACCTGGAAGTTTAATTTGGACC
TGACTCATCCAGTAGAAGATGGAATTTTTGATGCTCGAAATTTTGAACAGTTTCTACGGG
AGAAGGTTAAAGTGAATGGAAAAACTGGGAATCTTGGGAATGTTGTTCACATTGAACACT
TCAAGAATAAAATCATGGTTGTTTCTGAGAAACAGTTCTCTAAAAGGTATTTGAAATATC
TTACCAAGAAATACCTTAAGAAGAACAATCTTCGCGATTGGCTTCGTGTGGTTGCATCTG
ACAAGGAGACCTATGAACTTCGTTACTTCCAGATTAGTCAAGATGAAGATGGATCAGAGT
CTGAGGACTAAATGAAGCTGTCTTTTATAGGGCTTCGTGTGCTAATAAAACAAATGAAGC
AAGAGAAAGAGACATCTAGAAATTGACCTTTAGTTTATCAATGAATAAAAAACATTGTAC
TCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTGTTGACATGGTGCCGACTT
TCCTTTCTGTAGGCAATATGTAAATAGCTTATAGCTAGTGGAATTGTATCCAGTATTTCT
GATATGTATTGATTTTACAAATGTCCTTTTTATACACTAGTGTATAGTATAGGAAAAAGG
CACAATTTTGGGTGTAATTTTATATAATAAAGTATATAAAATTCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGAAGAAAGACAAGAAGCCTAAGAAGTCAACCTGGAAGTTTAATTTGGCCGGCCTCCA
ACATGGCGCCGAAGAAAGACAAGAAGCCTAAGAAGTCAACCTGGAAGTTTAATTTGGACC
TGACTCATCCAGTAGAAGATGGAATTTTTGATGCTCGAAATTTTGAACAGTTTCTACGGG
AGAAGGTTAAAGTGAATGGAAAAACTGGGAATCTTGGGAATGTTGTTCACATTGAACACT
TCAAGAATAAAATCATGGTTGTTTCTGAGAAACAGTTCTCTAAAAGGTATTTGAAATATC
TTACCAAGAAATACCTTAAGAAGAACAATCTTCGCGATTGGCTTCGTGTGGTTGCATCTG
ACAAGGAGACCTATGAACTTCGTTACTTCCAGATTAGTCAAGATGAAGATGGATCAGAGT
CTGAGGACTAAATGAAGCTGTCTTTTATAGGGCTTCGTGTGCTAATAAAACAAATGAAGC
AAGAGAAAGAGACATCTAGAAATTGACCTTTAGTTTATCAATGAATAAAAAACATTGTAC
TCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTGTTGACATGGTGCCGACTT
TCCTTTCTGTAGGCAATATGTAAATAGCTTATAGCTAGTGGAATTGTATCCAGTATTTCT
GATATGTATTGATTTTACAAATGTCCTTTTTATACACTAGTGTATAGTATAGGAAAAAGG
CACAATTTTGGGTGTAATTTTATATAATAAAGTATATAAAATTCTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P5R6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P5R6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-334, - strand, RNAz p=0.917587

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-334, - strand, RNAz p=0.917587

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               48-606, gnl|bosTau2|chr21 (36879043-36879604)
               

               
               48-606, gnl|Hg17|chr3 (172068880-172066703)
               

               
               48-606, gnl|Mm7|chr5 (21566593-21566124)
               


               
               53-554, gnl|bosTau2|chr19 (8337004-8337525)
               

               
               53-554, gnl|Mm7|chr5 (21566588-21566089)
               


               
               54-545, gnl|bosTau2|chr10 (30452569-30452080)
               

               
               54-545, gnl|Hg17|chr3 (172068886-172066762)
               

               
               54-545, gnl|Mm7|chr5 (21566583-21566126)
               


               
               631-780, gnl|bosTau2|chr21 (36880072-36880215)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-606, gnl|bosTau2|chr21 (36879043-36879604)
               

               
               48-606, gnl|Hg17|chr3 (172068880-172066703)
               

               
               48-606, gnl|Mm7|chr5 (21566593-21566124)
               


               
               53-554, gnl|bosTau2|chr19 (8337004-8337525)
               

               
               53-554, gnl|Mm7|chr5 (21566588-21566089)
               


               
               54-545, gnl|bosTau2|chr10 (30452569-30452080)
               

               
               54-545, gnl|Hg17|chr3 (172068886-172066762)
               

               
               54-545, gnl|Mm7|chr5 (21566583-21566126)
               


               
               631-780, gnl|bosTau2|chr21 (36880072-36880215)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

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               mgp (9.4579)
               

               
               ova (3.09917)
               

               
               mgm (3.06582)
               

               
               sag (2.74073)
               

               
               rec (2.42298)
               

               
               mga (2.24287)
               

               
               thg (2.15545)
               

               
               lyg (1.33103)
               

               
               vin (1.33023)
               

               
               amn (1.25313)
               

               
               gul (1.06553)
               

               
               csk (0.70373)
               

               
               eje (0.691836)
               

               
               spc (0.680195)
               

               
               nco (0.646935)
               

               
               col (0.585023)
               

               
               pro (0.512033)
               

               
               ese (0.506009)
               

               
               nbm (0.496623)
               

               
               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (9.4579)
               

               
               ova (3.09917)
               

               
               mgm (3.06582)
               

               
               sag (2.74073)
               

               
               rec (2.42298)
               

               
               mga (2.24287)
               

               
               thg (2.15545)
               

               
               lyg (1.33103)
               

               
               vin (1.33023)
               

               
               amn (1.25313)
               

               
               gul (1.06553)
               

               
               csk (0.70373)
               

               
               eje (0.691836)
               

               
               spc (0.680195)
               

               
               nco (0.646935)
               

               
               col (0.585023)
               

               
               pro (0.512033)
               

               
               ese (0.506009)
               

               
               nbm (0.496623)
               

               
               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	48-606, gnl\|bosTau2\|chr21 (36879043-36879604)
	48-606, gnl\|Hg17\|chr3 (172068880-172066703)
	48-606, gnl\|Mm7\|chr5 (21566593-21566124)

	53-554, gnl\|bosTau2\|chr19 (8337004-8337525)
	53-554, gnl\|Mm7\|chr5 (21566588-21566089)

	54-545, gnl\|bosTau2\|chr10 (30452569-30452080)
	54-545, gnl\|Hg17\|chr3 (172068886-172066762)
	54-545, gnl\|Mm7\|chr5 (21566583-21566126)

	631-780, gnl\|bosTau2\|chr21 (36880072-36880215)

	mgp (9.4579)
	ova (3.09917)
	mgm (3.06582)
	sag (2.74073)
	rec (2.42298)
	mga (2.24287)
	thg (2.15545)
	lyg (1.33103)
	vin (1.33023)
	amn (1.25313)
	gul (1.06553)
	csk (0.70373)
	eje (0.691836)
	spc (0.680195)
	nco (0.646935)
	col (0.585023)
	pro (0.512033)
	ese (0.506009)
	nbm (0.496623)
	bfe (0.449573)
	tes (0.415628)
	nca (0.410621)
	ute (0.398353)
	jej (0.395687)
	aor (0.390549)
	cmu (0.372787)
	ill (0.351185)
	med (0.348756)
	duo (0.345602)
	mcp (0.341297)
	fco (0.314416)
	tbr (0.308356)
	sme (0.305437)
	fat (0.294855)
	pty (0.285429)
	lnt (0.284616)
	nmm (0.265604)
	ret (0.257467)
	sug (0.254582)
	bla (0.248694)
	cbe (0.239234)
	pgl (0.236967)
	nms (0.213858)
	nlu (0.191681)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	eli (0.151814)
	cag (0.151194)
	isp (0.150376)
	lin (0.145603)
	spl (0.143184)
	ste (0.135208)
	kid (0.129735)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)