Non-Coding RNA Search

Ss1.1-rgul0108_i20.5

Sequence:


               
               GCAGCTTCCCTTACTGGATTTAAGGTCAAGGGCCAAGAACCAGGACTGCAGCTCAGGTAG
TGCTTCCTCTGGAATAAAAATTGGACTAAAAGTAGAGAGCTCTGTCTGCCTAGCTCAATG
CAAAGCAACAACCACTGCTGAAGCATTTTCCCTTGAAGCCGAGCACTGTGCTAAGATGAA
CAAGACATACCCTGTTCACAACTTCTTATTCCCATGGAGCCCTTTTTTCCCTAGTCATGC
ACTCTGAGTGGTGGCCTTATATGTATTGGAAACTATTTTTTTGGATTTATTTAAACCATG
TAGATGAAGGCTTGAACAAAAATAGTAAGGTCTCTGGCTTCAGCAAACGGTGTTAGTGTT
CTTTGGACAAATCGGAAATTTCCCATTTCCTGCTTAAATGTCTGAAAAAGTGGGATTTTC
TTATTTAATCCATTTCCCTTTATTATTCAAATTCTTAAAATTATATTTTTTATAAATTGT
ACAGTAGTTCGCATTTTGTAGTCAATATTTGTCTTTTTAAGGTTATTAGTGTCCATGTAA
GAAAATGATAGCTTATTAAAAACCTTACGAAAGAGTGAATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTTCCCTTACTGGATTTAAGGTCAAGGGCCAAGAACCAGGACTGCAGCTCAGGTAG
TGCTTCCTCTGGAATAAAAATTGGACTAAAAGTAGAGAGCTCTGTCTGCCTAGCTCAATG
CAAAGCAACAACCACTGCTGAAGCATTTTCCCTTGAAGCCGAGCACTGTGCTAAGATGAA
CAAGACATACCCTGTTCACAACTTCTTATTCCCATGGAGCCCTTTTTTCCCTAGTCATGC
ACTCTGAGTGGTGGCCTTATATGTATTGGAAACTATTTTTTTGGATTTATTTAAACCATG
TAGATGAAGGCTTGAACAAAAATAGTAAGGTCTCTGGCTTCAGCAAACGGTGTTAGTGTT
CTTTGGACAAATCGGAAATTTCCCATTTCCTGCTTAAATGTCTGAAAAAGTGGGATTTTC
TTATTTAATCCATTTCCCTTTATTATTCAAATTCTTAAAATTATATTTTTTATAAATTGT
ACAGTAGTTCGCATTTTGTAGTCAATATTTGTCTTTTTAAGGTTATTAGTGTCCATGTAA
GAAAATGATAGCTTATTAAAAACCTTACGAAAGAGTGAATTAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-584, gnl|bosTau2|chr12 (3006544-3007141)
               

               
               20-584, gnl|Hg17|chr13 (40555547-40556148)
               

               
               20-584, gnl|Mm7|chr14 (74142117-74141620)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-584, gnl|bosTau2|chr12 (3006544-3007141)
               

               
               20-584, gnl|Hg17|chr13 (40555547-40556148)
               

               
               20-584, gnl|Mm7|chr14 (74142117-74141620)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               gul (0.177588)
               

               
               nco (0.161734)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               nco (0.161734)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	20-584, gnl\|bosTau2\|chr12 (3006544-3007141)
	20-584, gnl\|Hg17\|chr13 (40555547-40556148)
	20-584, gnl\|Mm7\|chr14 (74142117-74141620)

	gul (0.177588)
	nco (0.161734)
	lyg (0.133103)
	kid (0.129735)
	ebs (0.118301)
	spc (0.113366)