Ss1.1-rgul0109_n21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAGCCAAGAGCCTGGAGGCAGACCTCATGCAGCTGCAGGAGGATCTAGCTGCGGCTG AGAGGGCTCGCAAACAGGCAGACCTGGAGAAGGAGGAACTGGCCGAGGAGCTGGCCAGCA GTGTGTCGGGAAGGAACGCGCTCCAGGACGAGAAGCGCCGCCTGGAGGCTCGGATCGCGC AGCTGGAGGAGGAGCTGGAGGAAGAACAAGGCAACATGGAGGCCATGAGTGACCGCGTCC GGAAGGCCACGCAGCAGGCCGAGCAGCTCAGCAACGAGCTGGCAACAGAGCGTAGCGCGG CCCAGAAGAACGAGAGCGCTCGGCAGCAGCTGGAGAGGCAGAACAAGGAGCTGCGAAGCA AGCTGCAGGAGATGGAAGGGGCAGTCAGGTCGAAGTTCAAGTCCACCATTTCGGCACTGG AGGCCAAGATCGCACAGCTGGAGGAGCAAGTCGAGCAGGAGGCCAGAGAGAAACAGGCGG CCACCAAGTCACTGAAGCAGAAGGACAAGAAGCTGAAGGAGGTCCTACTGCAGGTGGAGG AGGAGCGCAAGATGGCAGAGCAGTACAAGGAGCAGGCGGAGAAAGGAAATGCGAGGGTCA AGCAACTCAAGAGGCAACTGGAGGAGGCGGAGGAAGAGTCCCAGCGCATCAACGCCAACC GCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCG AAGTGACGGCGCTCAAGAGCAAGCTCAGGCGAGGAAACGAGACCTCGTTCGTTCCCTCAA GGAGGTCTGGAGGCCGCAGAGTTATTGAAAACGCAGATGGATCTGACGAGGAAATGGACG CTCGAGATGCAGACTTCAACGGAACCAAAGCCAGTGAATGATCAACTTGTGTAAAACAGG ACAAAACCAAACCCGGTGAACTCCGCTTAGCACTGTCCAAATCCATTTGCAAAGTCCAAA CATCACCGACACCCCTCACGATGAATATTTGAAAAACAAAAACAAAAAACACCCCCCCTG TTGGTTCAGGGCAGCAATTTAAGTTTTGAATGAGGTACCAAGTGAGAAAAACCCAATGGG AAACACAGACACAGCCACCCCCTCTGCCGAGGTGTGCAGAGCTTTTGACTTTTTAGAAAA AATTAGATCCACGGTTAACTAAGCCCTGGCAACTTAGTGTACATGAAACGGGGAGACTCA CCACAGTGGGTGCCGCTGGCCCCACCACCGGGCCCTTCCTGTCCCGTGTACCCTGCCAGC GGCCCCGGAGGCCCCGGTTTGCGAATTCCTCTTCCCTCCGGTTCCCACGCGTCAGATGCA CACAGTTCACCGAGACCAAGTGCCTCTGTAGTCACAGGAATGCAAAAGGCGACGCTGCTG CGACGGCTGAGAGCGGCAATGTCACACTGTTTTATAAGCACCCCGACTGTACTTTCCAGG ACACCCTCACTAATAAAAGGTTATAAATCACTAGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAGCCAAGAGCCTGGAGGCAGACCTCATGCAGCTGCAGGAGGATCTAGCTGCGGCTG AGAGGGCTCGCAAACAGGCAGACCTGGAGAAGGAGGAACTGGCCGAGGAGCTGGCCAGCA GTGTGTCGGGAAGGAACGCGCTCCAGGACGAGAAGCGCCGCCTGGAGGCTCGGATCGCGC AGCTGGAGGAGGAGCTGGAGGAAGAACAAGGCAACATGGAGGCCATGAGTGACCGCGTCC GGAAGGCCACGCAGCAGGCCGAGCAGCTCAGCAACGAGCTGGCAACAGAGCGTAGCGCGG CCCAGAAGAACGAGAGCGCTCGGCAGCAGCTGGAGAGGCAGAACAAGGAGCTGCGAAGCA AGCTGCAGGAGATGGAAGGGGCAGTCAGGTCGAAGTTCAAGTCCACCATTTCGGCACTGG AGGCCAAGATCGCACAGCTGGAGGAGCAAGTCGAGCAGGAGGCCAGAGAGAAACAGGCGG CCACCAAGTCACTGAAGCAGAAGGACAAGAAGCTGAAGGAGGTCCTACTGCAGGTGGAGG AGGAGCGCAAGATGGCAGAGCAGTACAAGGAGCAGGCGGAGAAAGGAAATGCGAGGGTCA AGCAACTCAAGAGGCAACTGGAGGAGGCGGAGGAAGAGTCCCAGCGCATCAACGCCAACC GCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCG AAGTGACGGCGCTCAAGAGCAAGCTCAGGCGAGGAAACGAGACCTCGTTCGTTCCCTCAA GGAGGTCTGGAGGCCGCAGAGTTATTGAAAACGCAGATGGATCTGACGAGGAAATGGACG CTCGAGATGCAGACTTCAACGGAACCAAAGCCAGTGAATGATCAACTTGTGTAAAACAGG ACAAAACCAAACCCGGTGAACTCCGCTTAGCACTGTCCAAATCCATTTGCAAAGTCCAAA CATCACCGACACCCCTCACGATGAATATTTGAAAAACAAAAACAAAAAACACCCCCCCTG TTGGTTCAGGGCAGCAATTTAAGTTTTGAATGAGGTACCAAGTGAGAAAAACCCAATGGG AAACACAGACACAGCCACCCCCTCTGCCGAGGTGTGCAGAGCTTTTGACTTTTTAGAAAA AATTAGATCCACGGTTAACTAAGCCCTGGCAACTTAGTGTACATGAAACGGGGAGACTCA CCACAGTGGGTGCCGCTGGCCCCACCACCGGGCCCTTCCTGTCCCGTGTACCCTGCCAGC GGCCCCGGAGGCCCCGGTTTGCGAATTCCTCTTCCCTCCGGTTCCCACGCGTCAGATGCA CACAGTTCACCGAGACCAAGTGCCTCTGTAGTCACAGGAATGCAAAAGGCGACGCTGCTG CGACGGCTGAGAGCGGCAATGTCACACTGTTTTATAAGCACCCCGACTGTACTTTCCAGG ACACCCTCACTAATAAAAGGTTATAAATCACTAGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 255-466, gnl|bosTau2|chr25 (16262838-16262627) | |
| 255-466, gnl|canFam2|chr6 (31177609-31177388) | |
| 255-466, gnl|danRer3|chr3 (32376928-32377142) | |
| 255-466, gnl|dasNov1|scaffold_13706 (5748-5970) | |
| 255-466, gnl|echTel1|scaffold_155681 (774-995) | |
| 255-466, gnl|fr1|chrUn (285975625-285975408) | |
| 255-466, gnl|galGal2|chr14 (9607792-9608017) | |
| 255-466, gnl|hg17|chr16 (15718490-15718711) | |
| 255-466, gnl|Hg17|chr16 (15718709-15718498) | |
| 255-466, gnl|loxAfr1|scaffold_85771 (437-658) | |
| 255-466, gnl|mm7|chr16 (13748563-13748784) | |
| 255-466, gnl|Mm7|chr16 (13748782-13748571) | |
| 255-466, gnl|monDom2|scaffold_17 (27560099-27559884) | |
| 255-466, gnl|oryCun1|scaffold_200334 (142242-142021) | |
| 255-466, gnl|panTro1|chr18 (16089391-16089612) | |
| 255-466, gnl|rheMac2|chr20 (15435112-15435333) | |
| 255-466, gnl|rn3|chr10 (769604-769383) | |
| 255-466, gnl|tetNig1|chrUn_random (27309322-27309040) | |
| 255-466, gnl|xenTro1|scaffold_214 (12879-13100) | |
| 746-988, gnl|bosTau2|chr25 (16252289-16252046) | |
| 746-988, gnl|Hg17|chr16 (15705484-15705177) | |
| 746-988, gnl|Mm7|chr16 (13741695-13741433) | |
| 1007-1476, gnl|bosTau2|chr25 (16252045-16251573) | |
| 1007-1476, gnl|Hg17|chr16 (15705176-15704490) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 255-466, gnl|bosTau2|chr25 (16262838-16262627) | |
| 255-466, gnl|canFam2|chr6 (31177609-31177388) | |
| 255-466, gnl|danRer3|chr3 (32376928-32377142) | |
| 255-466, gnl|dasNov1|scaffold_13706 (5748-5970) | |
| 255-466, gnl|echTel1|scaffold_155681 (774-995) | |
| 255-466, gnl|fr1|chrUn (285975625-285975408) | |
| 255-466, gnl|galGal2|chr14 (9607792-9608017) | |
| 255-466, gnl|hg17|chr16 (15718490-15718711) | |
| 255-466, gnl|Hg17|chr16 (15718709-15718498) | |
| 255-466, gnl|loxAfr1|scaffold_85771 (437-658) | |
| 255-466, gnl|mm7|chr16 (13748563-13748784) | |
| 255-466, gnl|Mm7|chr16 (13748782-13748571) | |
| 255-466, gnl|monDom2|scaffold_17 (27560099-27559884) | |
| 255-466, gnl|oryCun1|scaffold_200334 (142242-142021) | |
| 255-466, gnl|panTro1|chr18 (16089391-16089612) | |
| 255-466, gnl|rheMac2|chr20 (15435112-15435333) | |
| 255-466, gnl|rn3|chr10 (769604-769383) | |
| 255-466, gnl|tetNig1|chrUn_random (27309322-27309040) | |
| 255-466, gnl|xenTro1|scaffold_214 (12879-13100) | |
| 746-988, gnl|bosTau2|chr25 (16252289-16252046) | |
| 746-988, gnl|Hg17|chr16 (15705484-15705177) | |
| 746-988, gnl|Mm7|chr16 (13741695-13741433) | |
| 1007-1476, gnl|bosTau2|chr25 (16252045-16251573) | |
| 1007-1476, gnl|Hg17|chr16 (15705176-15704490) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| bla (3.60607) | |
| aor (1.56219) | |
| gul (1.06553) | |
| cut (0.679694) | |
| lin (0.582411) | |
| cst (0.560146) | |
| sto (0.539471) | |
| sin (0.524843) | |
| rec (0.519211) | |
| pro (0.512033) | |
| pty (0.428143) | |
| elu (0.385356) | |
| nco (0.323468) | |
| sme (0.305437) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| cov (0.264306) | |
| tes (0.207814) | |
| hea (0.204499) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (3.60607) | |
| aor (1.56219) | |
| gul (1.06553) | |
| cut (0.679694) | |
| lin (0.582411) | |
| cst (0.560146) | |
| sto (0.539471) | |
| sin (0.524843) | |
| rec (0.519211) | |
| pro (0.512033) | |
| pty (0.428143) | |
| elu (0.385356) | |
| nco (0.323468) | |
| sme (0.305437) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| cov (0.264306) | |
| tes (0.207814) | |
| hea (0.204499) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) |