Ss1.1-rgul0110_j11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGTTCGTCTCATGGGCTGTCAAGATATCCTAGAGAATGTTCCTGGACGGTCAAAAGCA GCATCGGTTGCACTACCTGGCTGGAGTCCAAGTGAAACCAGATCATCTTTCATGAGCAGA ACAAGTAAAAGTAAAAGCGGAAGTAGCCGAAATCTCCTAAAAACTGATGACTTGTCCAAC GATGTGTGTGCGGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTAGCTGGAAACCC ATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAGCTAGACAGGTCACGTGAACTG GAAATTTCAGTTTATTGGCGTGATTGGCGATCTCTGTGTGCTGTAAAATTTCTGAGGTTA GAAGATTTTTTAGACAACCAGCGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACT TTATTTGCAGAGGTTACCTTTTTTAATCCAGTTATTGAAAGAAGACCAAAACTCCAAAGA CAAAAGAAAATTTTTTCAAAACAACAAGGCAAAACATTTCTCAGAGCTCCTCAAATGAAT ATTAATATTGCCACTTGGGGAAGGCTAGTGAGAAGAGCTATTCCTACAGTAAATCATTCT GGCACCTTCAGCCCCCAAGCCCCCGTGCCTGCTGCAGTGCCAGTGGTTGATGTGCGCCTT CCTGAGCTAGCACCTCCAGCTACTGATTCCGCAGTAACCAAATTGGACTTTGATCTCGAA CCCGTACCTCCTCCGGCCCCACCACGTGATTCTTCCCTCGGAGAAGTAGATGAAGCTGCT GAATTAAGAGATCTGGATACACCAGGACAGGATTCAGAAACTCTTTTTGATACTGAGAAT GACAGAAATAGTATCCTTCCAAAGTCTCAGTCTGAATATGAACCTGATATTCCTCAGTCG GGCTTAGAATATAGTGGTATTCATGAACTTGAGGACAGAAGATCTCAACAGATGTTCCAG TTTAATCTACAAGACTTCAGATGTTGTGCTGTCTTGGGTAGAGGACATTTTGGAAAGGTG CTTTTGGCTGAATATAAACACACAAACGAAATGTTTGCTATAAAAGCCTTAAAGAAAGGA GACATTGTGGCTCGAGATGAAGTAGACAGCCTGATGTGTGAAAAAAGAATTTTTGAGACT GTGAATAGTGTGAGGCACCCCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGTTCGTCTCATGGGCTGTCAAGATATCCTAGAGAATGTTCCTGGACGGTCAAAAGCA GCATCGGTTGCACTACCTGGCTGGAGTCCAAGTGAAACCAGATCATCTTTCATGAGCAGA ACAAGTAAAAGTAAAAGCGGAAGTAGCCGAAATCTCCTAAAAACTGATGACTTGTCCAAC GATGTGTGTGCGGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTAGCTGGAAACCC ATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAGCTAGACAGGTCACGTGAACTG GAAATTTCAGTTTATTGGCGTGATTGGCGATCTCTGTGTGCTGTAAAATTTCTGAGGTTA GAAGATTTTTTAGACAACCAGCGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACT TTATTTGCAGAGGTTACCTTTTTTAATCCAGTTATTGAAAGAAGACCAAAACTCCAAAGA CAAAAGAAAATTTTTTCAAAACAACAAGGCAAAACATTTCTCAGAGCTCCTCAAATGAAT ATTAATATTGCCACTTGGGGAAGGCTAGTGAGAAGAGCTATTCCTACAGTAAATCATTCT GGCACCTTCAGCCCCCAAGCCCCCGTGCCTGCTGCAGTGCCAGTGGTTGATGTGCGCCTT CCTGAGCTAGCACCTCCAGCTACTGATTCCGCAGTAACCAAATTGGACTTTGATCTCGAA CCCGTACCTCCTCCGGCCCCACCACGTGATTCTTCCCTCGGAGAAGTAGATGAAGCTGCT GAATTAAGAGATCTGGATACACCAGGACAGGATTCAGAAACTCTTTTTGATACTGAGAAT GACAGAAATAGTATCCTTCCAAAGTCTCAGTCTGAATATGAACCTGATATTCCTCAGTCG GGCTTAGAATATAGTGGTATTCATGAACTTGAGGACAGAAGATCTCAACAGATGTTCCAG TTTAATCTACAAGACTTCAGATGTTGTGCTGTCTTGGGTAGAGGACATTTTGGAAAGGTG CTTTTGGCTGAATATAAACACACAAACGAAATGTTTGCTATAAAAGCCTTAAAGAAAGGA GACATTGTGGCTCGAGATGAAGTAGACAGCCTGATGTGTGAAAAAAGAATTTTTGAGACT GTGAATAGTGTGAGGCACCCCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-178, gnl|bosTau2|chr3 (45661170-45660992) | |
| 1-178, gnl|Hg17|chr1 (88962351-88962528) | |
| 1-178, gnl|Mm7|chr3 (142714635-142714458) | |
| 288-434, gnl|bosTau2|chr3 (45650424-45650278) | |
| 288-434, gnl|canFam2|chr6 (62638570-62638383) | |
| 288-434, gnl|danRer3|chrUn (53757198-53757363) | |
| 288-434, gnl|dasNov1|scaffold_11628 (3702-3554) | |
| 288-434, gnl|echTel1|scaffold_284445 (45581-45392) | |
| 288-434, gnl|fr1|chrUn (45816570-45816719) | |
| 288-434, gnl|galGal2|chr8 (15521122-15520957) | |
| 288-434, gnl|hg17|chr1 (88982070-88982256) | |
| 288-434, gnl|Hg17|chr1 (88982094-88982240) | |
| 288-434, gnl|loxAfr1|scaffold_118917 (8479-8627) | |
| 288-434, gnl|mm7|chr3 (142705026-142704837) | |
| 288-434, gnl|Mm7|chr3 (142704997-142704851) | |
| 288-434, gnl|monDom2|scaffold_87 (5120210-5120017) | |
| 288-434, gnl|oryCun1|scaffold_211825 (31087-30903) | |
| 288-434, gnl|panTro1|chr1_random (80537905-80537719) | |
| 288-434, gnl|rheMac2|chr1 (91531178-91531366) | |
| 288-434, gnl|rn3|chr2 (240915098-240914911) | |
| 288-434, gnl|tetNig1|chr15 (3574558-3574706) | |
| 288-434, gnl|xenTro1|scaffold_538 (564006-563816) | |
| 493-682, gnl|bosTau2|chr3 (45649322-45649133) | |
| 493-682, gnl|Hg17|chr1 (88983185-88983374) | |
| 493-682, gnl|Mm7|chr3 (142703820-142703631) | |
| 808-941, gnl|bosTau2|chr3 (45646767-45646634) | |
| 808-941, gnl|canFam2|chr6 (62636101-62635874) | |
| 808-941, gnl|dasNov1|scaffold_291187 (1281-1067) | |
| 808-941, gnl|echTel1|scaffold_284445 (43395-43172) | |
| 808-941, gnl|galGal2|chr8 (15519496-15519307) | |
| 808-941, gnl|hg17|chr1 (88984894-88985128) | |
| 808-941, gnl|Hg17|chr1 (88985014-88985147) | |
| 808-941, gnl|mm7|chr3 (142702972-142702784) | |
| 808-941, gnl|Mm7|chr3 (142702896-142702763) | |
| 808-941, gnl|monDom2|scaffold_87 (5118021-5117787) | |
| 808-941, gnl|panTro1|chr1_random (80535073-80534839) | |
| 808-941, gnl|rheMac2|chr1 (91534145-91534381) | |
| 808-941, gnl|rn3|chr2 (240913072-240912875) | |
| 808-941, gnl|xenTro1|scaffold_538 (560627-560405) | |
| 1016-1140, gnl|bosTau2|chr3 (45646401-45646278) | |
| 1016-1140, gnl|canFam2|chr6 (62635621-62635512) | |
| 1016-1140, gnl|danRer3|chrUn (53763805-53763901) | |
| 1016-1140, gnl|dasNov1|scaffold_291187 (811-704) | |
| 1016-1140, gnl|echTel1|scaffold_284445 (42909-42802) | |
| 1016-1140, gnl|fr1|chrUn (45817776-45817874) | |
| 1016-1140, gnl|galGal2|chr8 (15519046-15518940) | |
| 1016-1140, gnl|hg17|chr1 (88985386-88985492) | |
| 1016-1140, gnl|Hg17|chr1 (88985386-88985508) | |
| 1016-1140, gnl|mm7|chr3 (142702507-142702401) | |
| 1016-1140, gnl|Mm7|chr3 (142702505-142702390) | |
| 1016-1140, gnl|monDom2|scaffold_87 (5117446-5117340) | |
| 1016-1140, gnl|panTro1|chr1_random (80534581-80534475) | |
| 1016-1140, gnl|rheMac2|chr1 (91534637-91534743) | |
| 1016-1140, gnl|rn3|chr2 (240911312-240911207) | |
| 1016-1140, gnl|tetNig1|chr15 (3575762-3575868) | |
| 1016-1140, gnl|xenTro1|scaffold_538 (560150-560035) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-178, gnl|bosTau2|chr3 (45661170-45660992) | |
| 1-178, gnl|Hg17|chr1 (88962351-88962528) | |
| 1-178, gnl|Mm7|chr3 (142714635-142714458) | |
| 288-434, gnl|bosTau2|chr3 (45650424-45650278) | |
| 288-434, gnl|canFam2|chr6 (62638570-62638383) | |
| 288-434, gnl|danRer3|chrUn (53757198-53757363) | |
| 288-434, gnl|dasNov1|scaffold_11628 (3702-3554) | |
| 288-434, gnl|echTel1|scaffold_284445 (45581-45392) | |
| 288-434, gnl|fr1|chrUn (45816570-45816719) | |
| 288-434, gnl|galGal2|chr8 (15521122-15520957) | |
| 288-434, gnl|hg17|chr1 (88982070-88982256) | |
| 288-434, gnl|Hg17|chr1 (88982094-88982240) | |
| 288-434, gnl|loxAfr1|scaffold_118917 (8479-8627) | |
| 288-434, gnl|mm7|chr3 (142705026-142704837) | |
| 288-434, gnl|Mm7|chr3 (142704997-142704851) | |
| 288-434, gnl|monDom2|scaffold_87 (5120210-5120017) | |
| 288-434, gnl|oryCun1|scaffold_211825 (31087-30903) | |
| 288-434, gnl|panTro1|chr1_random (80537905-80537719) | |
| 288-434, gnl|rheMac2|chr1 (91531178-91531366) | |
| 288-434, gnl|rn3|chr2 (240915098-240914911) | |
| 288-434, gnl|tetNig1|chr15 (3574558-3574706) | |
| 288-434, gnl|xenTro1|scaffold_538 (564006-563816) | |
| 493-682, gnl|bosTau2|chr3 (45649322-45649133) | |
| 493-682, gnl|Hg17|chr1 (88983185-88983374) | |
| 493-682, gnl|Mm7|chr3 (142703820-142703631) | |
| 808-941, gnl|bosTau2|chr3 (45646767-45646634) | |
| 808-941, gnl|canFam2|chr6 (62636101-62635874) | |
| 808-941, gnl|dasNov1|scaffold_291187 (1281-1067) | |
| 808-941, gnl|echTel1|scaffold_284445 (43395-43172) | |
| 808-941, gnl|galGal2|chr8 (15519496-15519307) | |
| 808-941, gnl|hg17|chr1 (88984894-88985128) | |
| 808-941, gnl|Hg17|chr1 (88985014-88985147) | |
| 808-941, gnl|mm7|chr3 (142702972-142702784) | |
| 808-941, gnl|Mm7|chr3 (142702896-142702763) | |
| 808-941, gnl|monDom2|scaffold_87 (5118021-5117787) | |
| 808-941, gnl|panTro1|chr1_random (80535073-80534839) | |
| 808-941, gnl|rheMac2|chr1 (91534145-91534381) | |
| 808-941, gnl|rn3|chr2 (240913072-240912875) | |
| 808-941, gnl|xenTro1|scaffold_538 (560627-560405) | |
| 1016-1140, gnl|bosTau2|chr3 (45646401-45646278) | |
| 1016-1140, gnl|canFam2|chr6 (62635621-62635512) | |
| 1016-1140, gnl|danRer3|chrUn (53763805-53763901) | |
| 1016-1140, gnl|dasNov1|scaffold_291187 (811-704) | |
| 1016-1140, gnl|echTel1|scaffold_284445 (42909-42802) | |
| 1016-1140, gnl|fr1|chrUn (45817776-45817874) | |
| 1016-1140, gnl|galGal2|chr8 (15519046-15518940) | |
| 1016-1140, gnl|hg17|chr1 (88985386-88985492) | |
| 1016-1140, gnl|Hg17|chr1 (88985386-88985508) | |
| 1016-1140, gnl|mm7|chr3 (142702507-142702401) | |
| 1016-1140, gnl|Mm7|chr3 (142702505-142702390) | |
| 1016-1140, gnl|monDom2|scaffold_87 (5117446-5117340) | |
| 1016-1140, gnl|panTro1|chr1_random (80534581-80534475) | |
| 1016-1140, gnl|rheMac2|chr1 (91534637-91534743) | |
| 1016-1140, gnl|rn3|chr2 (240911312-240911207) | |
| 1016-1140, gnl|tetNig1|chr15 (3575762-3575868) | |
| 1016-1140, gnl|xenTro1|scaffold_538 (560150-560035) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| kid (0.129735) |