Ss1.1-rgul0110_p23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTATTACAAAAGGAGCCTGGGAGGTCATTGGGATAGAAGCTCTTACCAGTGATTACC TGTACTACATTAGTAATGAACATAAAGGAATGCCAGGAGGAAGAAATCTCTATAGGATCC AGCTTAATGACTACACAAAAGTGACGTGCCTTAGCTGTGAGCTGAATCCAGAAAGGTGTC AGTACTATTCTGCATCATTTAGTAACAAGGCAAAATACTATCAGCTGAGATGTTTTGGCC CTGGTCTGCCCCTCTATACTCTGCATAGCAGTAGCAGTGATAAAGAACTAAGAGTCCTGG AAGACAATTCAGCTTTGGATAAAATGCTGCAGGATGTCCAGATGCCCTCAAAAAAACTGG ACGTCATTAATTTGCATGGCACAAAATTTTGGTATCAGATGATCTTGCCTCCTCATTTTG ATAAGTCCAAGAAATATCCTCTGCTAATAGAAGTGTATGCAGGCCCTTGTAGTCAAAAAG TAGACACTGTCTTCAGACTCAGCTGGGCTACTTACCTTGCAAGTACAGAGAACATTATAG TAGCTAGCTTTGATGGCAGAGGAAGTGGTTACCAAGGAGATAAGATCATGCACGCAATCA ACAGAAGACTGGGAACATTTGAAGTTGAAGATCAAATTGAAGCAACCAGACAATTTTCAA AAATGGGATTTGTGGATGACAAGCGGATTGCAATTTGGGGCTGGTCATATGGAGGGTATG TAACCTCAATGGTCCTGGGAGCAGGAAGTGGCGTGTTCAAGTGTGGAATAGCCGTGGCAC CTGTGTCAAAGTGGGAGTACTACGACTCAGTGTACACAGAGCGTTACATGGGTCTTCCAA CTCCAGAAGACAACCTTGACTATTACAGGAATTCAACAGTCATGAGCAGAGCTGAAAATT TTAAACAAGTTGAGTACCTCCTTATTCATGGAACAGCAGATGATAACGTTCATTTTCAGC AGTCGGCTCAGCTCTCTAAAGCCCTGGTGGATGCTGGAGTGGATTTCCAGACAATGTGGT ATACAGATGAAGACCATGGGATTGCCAGCAACATGGCACATCAACATATATATACGCACA TGAGCCATTTTCTAAAACAATGCTTCTCTCTACCCTAGCACCTTGAAACAGCATGCCATT TAAAGCTTACGAAAAGCCACTTTTGCTCTCATTATCTCCAAACTGCACTGTCAAGATGAT GATCTTAAAAAAAAAAAAAATACACTCAAATCAAGAAATGCAAGGTTACTTTTGTTCCCA AATTTCCTATCTATAACCCTAAATAGGGACTTCCGTTTTCACAACAGATTATTACCTTAC AGAAGTTTGAATTACTCAGTCTGGCTTTATTACTTAATAACATTTCCACATCAGTTGGTG AAACAACAAATAAGAACTATTTTTATGGGAGCTTTGCAGAAGTTCCCTAGGCAGCCTTTT TTTCTAACTGGACTAGTCCAAATCTTGTTCTCTTTTTTAAAAGAATGGCAGGATTTGGGC AGTGATGTCACTGAAACAGGGGTAAGAAAAGAGGGGGTAGGGAGAGAAGCTAGCAGTGGG AGGCTGTGAACCCTAGCCCAAGCATGCTGACCCGTCAGCTCCCGGGGGAGAGCTGTTCAC AGCCAGACTGGCACAGTTTTCCGAGAAAGACAATTCAGTCTCAGGAAATCATATATGCAA AACACTGACTTCTGAGTAAAACCACAGCAGTTGAATAGACTCCAAAGAAATGAGAGGGAA ACTGCCAACAATGCAGGGCCCCCAGGTGCCAGTTATGGCTATAGGTGCTACAAAAACACA GCAAGGGTGATGGGAAAGCATTGTAAATGTGCTTTAAAAATACTGATGTTTCCTAGTGAG AGAGGCAGCTTGGAACTGAGATGTGAACACATCAGCTTGCCCTGTTAAGAGATGAAAATA TTTGTATTGCAAATCTTAACTTGAAGGAGTCTTTGCATCAGTTTTTCTTATTTCATTTCT TTGAGCATCTAATTAAAGGAATATTTTAACTTCCTTGAACTTGTTTTTAAAAAATTGAAA ATAAGCTACAAATATATGTATTATTATGATTCCCATTCTATAGACTGTGGATTTTCTACT GGTCAGTAATAAACGTGCCTTCATTTTTTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTATTACAAAAGGAGCCTGGGAGGTCATTGGGATAGAAGCTCTTACCAGTGATTACC TGTACTACATTAGTAATGAACATAAAGGAATGCCAGGAGGAAGAAATCTCTATAGGATCC AGCTTAATGACTACACAAAAGTGACGTGCCTTAGCTGTGAGCTGAATCCAGAAAGGTGTC AGTACTATTCTGCATCATTTAGTAACAAGGCAAAATACTATCAGCTGAGATGTTTTGGCC CTGGTCTGCCCCTCTATACTCTGCATAGCAGTAGCAGTGATAAAGAACTAAGAGTCCTGG AAGACAATTCAGCTTTGGATAAAATGCTGCAGGATGTCCAGATGCCCTCAAAAAAACTGG ACGTCATTAATTTGCATGGCACAAAATTTTGGTATCAGATGATCTTGCCTCCTCATTTTG ATAAGTCCAAGAAATATCCTCTGCTAATAGAAGTGTATGCAGGCCCTTGTAGTCAAAAAG TAGACACTGTCTTCAGACTCAGCTGGGCTACTTACCTTGCAAGTACAGAGAACATTATAG TAGCTAGCTTTGATGGCAGAGGAAGTGGTTACCAAGGAGATAAGATCATGCACGCAATCA ACAGAAGACTGGGAACATTTGAAGTTGAAGATCAAATTGAAGCAACCAGACAATTTTCAA AAATGGGATTTGTGGATGACAAGCGGATTGCAATTTGGGGCTGGTCATATGGAGGGTATG TAACCTCAATGGTCCTGGGAGCAGGAAGTGGCGTGTTCAAGTGTGGAATAGCCGTGGCAC CTGTGTCAAAGTGGGAGTACTACGACTCAGTGTACACAGAGCGTTACATGGGTCTTCCAA CTCCAGAAGACAACCTTGACTATTACAGGAATTCAACAGTCATGAGCAGAGCTGAAAATT TTAAACAAGTTGAGTACCTCCTTATTCATGGAACAGCAGATGATAACGTTCATTTTCAGC AGTCGGCTCAGCTCTCTAAAGCCCTGGTGGATGCTGGAGTGGATTTCCAGACAATGTGGT ATACAGATGAAGACCATGGGATTGCCAGCAACATGGCACATCAACATATATATACGCACA TGAGCCATTTTCTAAAACAATGCTTCTCTCTACCCTAGCACCTTGAAACAGCATGCCATT TAAAGCTTACGAAAAGCCACTTTTGCTCTCATTATCTCCAAACTGCACTGTCAAGATGAT GATCTTAAAAAAAAAAAAAATACACTCAAATCAAGAAATGCAAGGTTACTTTTGTTCCCA AATTTCCTATCTATAACCCTAAATAGGGACTTCCGTTTTCACAACAGATTATTACCTTAC AGAAGTTTGAATTACTCAGTCTGGCTTTATTACTTAATAACATTTCCACATCAGTTGGTG AAACAACAAATAAGAACTATTTTTATGGGAGCTTTGCAGAAGTTCCCTAGGCAGCCTTTT TTTCTAACTGGACTAGTCCAAATCTTGTTCTCTTTTTTAAAAGAATGGCAGGATTTGGGC AGTGATGTCACTGAAACAGGGGTAAGAAAAGAGGGGGTAGGGAGAGAAGCTAGCAGTGGG AGGCTGTGAACCCTAGCCCAAGCATGCTGACCCGTCAGCTCCCGGGGGAGAGCTGTTCAC AGCCAGACTGGCACAGTTTTCCGAGAAAGACAATTCAGTCTCAGGAAATCATATATGCAA AACACTGACTTCTGAGTAAAACCACAGCAGTTGAATAGACTCCAAAGAAATGAGAGGGAA ACTGCCAACAATGCAGGGCCCCCAGGTGCCAGTTATGGCTATAGGTGCTACAAAAACACA GCAAGGGTGATGGGAAAGCATTGTAAATGTGCTTTAAAAATACTGATGTTTCCTAGTGAG AGAGGCAGCTTGGAACTGAGATGTGAACACATCAGCTTGCCCTGTTAAGAGATGAAAATA TTTGTATTGCAAATCTTAACTTGAAGGAGTCTTTGCATCAGTTTTTCTTATTTCATTTCT TTGAGCATCTAATTAAAGGAATATTTTAACTTCCTTGAACTTGTTTTTAAAAAATTGAAA ATAAGCTACAAATATATGTATTATTATGATTCCCATTCTATAGACTGTGGATTTTCTACT GGTCAGTAATAAACGTGCCTTCATTTTTTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1521-1741, - strand, RNAz p=0.977412 | |
| 1782-1895, - strand, RNAz p=0.82754 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1521-1741, - strand, RNAz p=0.977412 | |
| 1782-1895, - strand, RNAz p=0.82754 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 111-234, gnl|bosTau2|chr2 (25468018-25468141) | |
| 111-234, gnl|canFam2|chr36 (10432982-10433095) | |
| 111-234, gnl|danRer3|chr22 (10068807-10068899) | |
| 111-234, gnl|dasNov1|scaffold_706 (38300-38188) | |
| 111-234, gnl|echTel1|scaffold_254058 (1580-1693) | |
| 111-234, gnl|fr1|chrUn (173340884-173340766) | |
| 111-234, gnl|galGal2|chr7 (21995900-21995804) | |
| 111-234, gnl|hg17|chr2 (162700724-162700837) | |
| 111-234, gnl|Hg17|chr2 (162700872-162700749) | |
| 111-234, gnl|mm7|chr2 (62289312-62289424) | |
| 111-234, gnl|Mm7|chr2 (62289459-62289336) | |
| 111-234, gnl|monDom2|scaffold_2 (56543941-56544054) | |
| 111-234, gnl|oryCun1|scaffold_201635 (95419-95531) | |
| 111-234, gnl|panTro1|chr13 (52097137-52097250) | |
| 111-234, gnl|rheMac2|chr12 (25586659-25586772) | |
| 111-234, gnl|rn3|chr3 (44202951-44203062) | |
| 111-234, gnl|tetNig1|chr2 (11955601-11955506) | |
| 111-234, gnl|xenTro1|scaffold_576 (780951-780856) | |
| 284-384, gnl|bosTau2|chr2 (25470143-25470243) | |
| 284-384, gnl|Hg17|chr2 (162698885-162698785) | |
| 284-384, gnl|Mm7|chr2 (62287265-62287165) | |
| 456-649, gnl|bosTau2|chr2 (25475518-25475711) | |
| 456-649, gnl|canFam2|chr36 (10425727-10425961) | |
| 456-649, gnl|danRer3|chr22 (44198379-44198170) | |
| 456-649, gnl|dasNov1|scaffold_706 (45501-45267) | |
| 456-649, gnl|echTel1|scaffold_312698 (56532-56766) | |
| 456-649, gnl|fr1|chrUn (173341749-173341551) | |
| 456-649, gnl|galGal2|chr7 (22004383-22004153) | |
| 456-649, gnl|hg17|chr2 (162693801-162694035) | |
| 456-649, gnl|Hg17|chr2 (162694003-162693810) | |
| 456-649, gnl|loxAfr1|scaffold_14034 (51926-52135) | |
| 456-649, gnl|mm7|chr2 (62282662-62282875) | |
| 456-649, gnl|Mm7|chr2 (62282864-62282671) | |
| 456-649, gnl|monDom2|scaffold_2 (56533322-56533556) | |
| 456-649, gnl|oryCun1|scaffold_175832 (23872-24104) | |
| 456-649, gnl|panTro1|chr13 (52090213-52090447) | |
| 456-649, gnl|rheMac2|chr12 (25579757-25579991) | |
| 456-649, gnl|rn3|chr3 (44196434-44196646) | |
| 456-649, gnl|tetNig1|chr2 (11956492-11956288) | |
| 456-649, gnl|xenTro1|scaffold_311 (19390-19183) | |
| 1016-2129, gnl|bosTau2|chr2 (25494600-25495719) | |
| 1016-2129, gnl|canFam2|chr36 (10407234-10408088) | |
| 1016-2129, gnl|dasNov1|scaffold_11037 (51325-50504) | |
| 1016-2129, gnl|echTel1|scaffold_293210 (137554-138389) | |
| 1016-2129, gnl|hg17|chr2 (162674154-162675010) | |
| 1016-2129, gnl|Hg17|chr2 (162675402-162674268) | |
| 1016-2129, gnl|loxAfr1|scaffold_14552 (859-4) | |
| 1016-2129, gnl|mm7|chr2 (62262074-62262893) | |
| 1016-2129, gnl|Mm7|chr2 (62263269-62262186) | |
| 1016-2129, gnl|monDom2|scaffold_2 (56509746-56510610) | |
| 1016-2129, gnl|oryCun1|scaffold_175832 (4417-5274) | |
| 1016-2129, gnl|panTro1|chr13 (52070551-52071406) | |
| 1016-2129, gnl|rheMac2|chr12 (25560154-25561003) | |
| 1016-2129, gnl|rn3|chr3 (44177095-44177916) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-234, gnl|bosTau2|chr2 (25468018-25468141) | |
| 111-234, gnl|canFam2|chr36 (10432982-10433095) | |
| 111-234, gnl|danRer3|chr22 (10068807-10068899) | |
| 111-234, gnl|dasNov1|scaffold_706 (38300-38188) | |
| 111-234, gnl|echTel1|scaffold_254058 (1580-1693) | |
| 111-234, gnl|fr1|chrUn (173340884-173340766) | |
| 111-234, gnl|galGal2|chr7 (21995900-21995804) | |
| 111-234, gnl|hg17|chr2 (162700724-162700837) | |
| 111-234, gnl|Hg17|chr2 (162700872-162700749) | |
| 111-234, gnl|mm7|chr2 (62289312-62289424) | |
| 111-234, gnl|Mm7|chr2 (62289459-62289336) | |
| 111-234, gnl|monDom2|scaffold_2 (56543941-56544054) | |
| 111-234, gnl|oryCun1|scaffold_201635 (95419-95531) | |
| 111-234, gnl|panTro1|chr13 (52097137-52097250) | |
| 111-234, gnl|rheMac2|chr12 (25586659-25586772) | |
| 111-234, gnl|rn3|chr3 (44202951-44203062) | |
| 111-234, gnl|tetNig1|chr2 (11955601-11955506) | |
| 111-234, gnl|xenTro1|scaffold_576 (780951-780856) | |
| 284-384, gnl|bosTau2|chr2 (25470143-25470243) | |
| 284-384, gnl|Hg17|chr2 (162698885-162698785) | |
| 284-384, gnl|Mm7|chr2 (62287265-62287165) | |
| 456-649, gnl|bosTau2|chr2 (25475518-25475711) | |
| 456-649, gnl|canFam2|chr36 (10425727-10425961) | |
| 456-649, gnl|danRer3|chr22 (44198379-44198170) | |
| 456-649, gnl|dasNov1|scaffold_706 (45501-45267) | |
| 456-649, gnl|echTel1|scaffold_312698 (56532-56766) | |
| 456-649, gnl|fr1|chrUn (173341749-173341551) | |
| 456-649, gnl|galGal2|chr7 (22004383-22004153) | |
| 456-649, gnl|hg17|chr2 (162693801-162694035) | |
| 456-649, gnl|Hg17|chr2 (162694003-162693810) | |
| 456-649, gnl|loxAfr1|scaffold_14034 (51926-52135) | |
| 456-649, gnl|mm7|chr2 (62282662-62282875) | |
| 456-649, gnl|Mm7|chr2 (62282864-62282671) | |
| 456-649, gnl|monDom2|scaffold_2 (56533322-56533556) | |
| 456-649, gnl|oryCun1|scaffold_175832 (23872-24104) | |
| 456-649, gnl|panTro1|chr13 (52090213-52090447) | |
| 456-649, gnl|rheMac2|chr12 (25579757-25579991) | |
| 456-649, gnl|rn3|chr3 (44196434-44196646) | |
| 456-649, gnl|tetNig1|chr2 (11956492-11956288) | |
| 456-649, gnl|xenTro1|scaffold_311 (19390-19183) | |
| 1016-2129, gnl|bosTau2|chr2 (25494600-25495719) | |
| 1016-2129, gnl|canFam2|chr36 (10407234-10408088) | |
| 1016-2129, gnl|dasNov1|scaffold_11037 (51325-50504) | |
| 1016-2129, gnl|echTel1|scaffold_293210 (137554-138389) | |
| 1016-2129, gnl|hg17|chr2 (162674154-162675010) | |
| 1016-2129, gnl|Hg17|chr2 (162675402-162674268) | |
| 1016-2129, gnl|loxAfr1|scaffold_14552 (859-4) | |
| 1016-2129, gnl|mm7|chr2 (62262074-62262893) | |
| 1016-2129, gnl|Mm7|chr2 (62263269-62262186) | |
| 1016-2129, gnl|monDom2|scaffold_2 (56509746-56510610) | |
| 1016-2129, gnl|oryCun1|scaffold_175832 (4417-5274) | |
| 1016-2129, gnl|panTro1|chr13 (52070551-52071406) | |
| 1016-2129, gnl|rheMac2|chr12 (25560154-25561003) | |
| 1016-2129, gnl|rn3|chr3 (44177095-44177916) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| sag (0.730861) | |
| sin (0.69979) | |
| jej (0.593531) | |
| kid (0.518941) | |
| cki (0.495704) | |
| lun (0.451467) | |
| hea (0.408998) | |
| lyg (0.399308) | |
| gul (0.355177) | |
| duo (0.345602) | |
| cje (0.330469) | |
| hlv (0.278513) | |
| cmu (0.186393) | |
| ski (0.146735) | |
| thg (0.126791) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.730861) | |
| sin (0.69979) | |
| jej (0.593531) | |
| kid (0.518941) | |
| cki (0.495704) | |
| lun (0.451467) | |
| hea (0.408998) | |
| lyg (0.399308) | |
| gul (0.355177) | |
| duo (0.345602) | |
| cje (0.330469) | |
| hlv (0.278513) | |
| cmu (0.186393) | |
| ski (0.146735) | |
| thg (0.126791) | |
| spc (0.113366) | |
| ldo (0.0970026) |