Non-Coding RNA Search

Ss1.1-rgul0112_f19.5

Sequence:


               
               ATTTTTTAATACATGGCATTATAAAGAAATTAGTCCTTTATTACTTTTGATACCAATTTT
TGATAGGAACGGACGACTTGAAATCATTTTCTTTACCTCTCTGAACCGTACTACAAATCA
TGAAAGGGTTTCGAGGGGACAGGAGAGCCCTGTGTCTGGGAGGAAAGGTGTGTCTCTCAG
CCAGCGGCCCATTGGTTTCCACTTACAAAGTCACATGACCCCTTCCTCACAGCGAAAACA
GCGGACTTGAAAAACCGAAAGTGAGTAATTAAAAGGAACAAAACCAACACCAAAACGAGA
GCGTTTTCATTCCTTTAAAGATGTGGCGATTCTCCCGAGACTTTTCTTTGTGTGCATTTT
GTGGTCAGGCATCTCGTTCTCAACTCACGTAACCCCCTGCGCTCAGTTCATGGGAACCGT
GGAAGATTCGTGGCCATCAACCCGCGTGCCCGGAGCTCATGGCCAGGAACTCTTCCGTTG
AAGGACGCGGTCAGTATTTGCCAGTGACTCAAACCCTGAATTATTGAACCATGCTTGGGG
TTTTTTTCCCCTCTTTGTTGGAAAAAAATAAACGGGTGATTTTGATAAATCACCAGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTAATACATGGCATTATAAAGAAATTAGTCCTTTATTACTTTTGATACCAATTTT
TGATAGGAACGGACGACTTGAAATCATTTTCTTTACCTCTCTGAACCGTACTACAAATCA
TGAAAGGGTTTCGAGGGGACAGGAGAGCCCTGTGTCTGGGAGGAAAGGTGTGTCTCTCAG
CCAGCGGCCCATTGGTTTCCACTTACAAAGTCACATGACCCCTTCCTCACAGCGAAAACA
GCGGACTTGAAAAACCGAAAGTGAGTAATTAAAAGGAACAAAACCAACACCAAAACGAGA
GCGTTTTCATTCCTTTAAAGATGTGGCGATTCTCCCGAGACTTTTCTTTGTGTGCATTTT
GTGGTCAGGCATCTCGTTCTCAACTCACGTAACCCCCTGCGCTCAGTTCATGGGAACCGT
GGAAGATTCGTGGCCATCAACCCGCGTGCCCGGAGCTCATGGCCAGGAACTCTTCCGTTG
AAGGACGCGGTCAGTATTTGCCAGTGACTCAAACCCTGAATTATTGAACCATGCTTGGGG
TTTTTTTCCCCTCTTTGTTGGAAAAAAATAAACGGGTGATTTTGATAAATCACCAGTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               14-109, - strand, RNAz p=0.733832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-109, - strand, RNAz p=0.733832

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK075561, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK075561, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-600, gnl|bosTau2|chr28 (1363597-1362990)
               

               
               1-600, gnl|canFam2|chr4 (11502889-11502265)
               

               
               1-600, gnl|dasNov1|scaffold_49839 (5735-6344)
               

               
               1-600, gnl|echTel1|scaffold_182616 (7342-7940)
               

               
               1-600, gnl|hg17|chr1 (227348607-227349230)
               

               
               1-600, gnl|Hg17|chr1 (227349332-227348734)
               

               
               1-600, gnl|loxAfr1|scaffold_22812 (28575-27957)
               

               
               1-600, gnl|mm7|chr8 (123258497-123259072)
               

               
               1-600, gnl|Mm7|chr8 (123259176-123258613)
               

               
               1-600, gnl|monDom2|scaffold_13 (59440100-59440701)
               

               
               1-600, gnl|oryCun1|scaffold_198292 (3304-2676)
               

               
               1-600, gnl|panTro1|chr1 (211198872-211199495)
               

               
               1-600, gnl|rheMac2|chr1 (226054441-226053821)
               

               
               1-600, gnl|rn3|chr19 (54853560-54854117)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr28 (1363597-1362990)
               

               
               1-600, gnl|canFam2|chr4 (11502889-11502265)
               

               
               1-600, gnl|dasNov1|scaffold_49839 (5735-6344)
               

               
               1-600, gnl|echTel1|scaffold_182616 (7342-7940)
               

               
               1-600, gnl|hg17|chr1 (227348607-227349230)
               

               
               1-600, gnl|Hg17|chr1 (227349332-227348734)
               

               
               1-600, gnl|loxAfr1|scaffold_22812 (28575-27957)
               

               
               1-600, gnl|mm7|chr8 (123258497-123259072)
               

               
               1-600, gnl|Mm7|chr8 (123259176-123258613)
               

               
               1-600, gnl|monDom2|scaffold_13 (59440100-59440701)
               

               
               1-600, gnl|oryCun1|scaffold_198292 (3304-2676)
               

               
               1-600, gnl|panTro1|chr1 (211198872-211199495)
               

               
               1-600, gnl|rheMac2|chr1 (226054441-226053821)
               

               
               1-600, gnl|rn3|chr19 (54853560-54854117)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               nbm (0.0993246)

	1-600, gnl\|bosTau2\|chr28 (1363597-1362990)
	1-600, gnl\|canFam2\|chr4 (11502889-11502265)
	1-600, gnl\|dasNov1\|scaffold_49839 (5735-6344)
	1-600, gnl\|echTel1\|scaffold_182616 (7342-7940)
	1-600, gnl\|hg17\|chr1 (227348607-227349230)
	1-600, gnl\|Hg17\|chr1 (227349332-227348734)
	1-600, gnl\|loxAfr1\|scaffold_22812 (28575-27957)
	1-600, gnl\|mm7\|chr8 (123258497-123259072)
	1-600, gnl\|Mm7\|chr8 (123259176-123258613)
	1-600, gnl\|monDom2\|scaffold_13 (59440100-59440701)
	1-600, gnl\|oryCun1\|scaffold_198292 (3304-2676)
	1-600, gnl\|panTro1\|chr1 (211198872-211199495)
	1-600, gnl\|rheMac2\|chr1 (226054441-226053821)
	1-600, gnl\|rn3\|chr19 (54853560-54854117)