Non-Coding RNA Search

Ss1.1-rgul0112_o9.5

Sequence:


               
               ACCTTTTTGACCCAGTGAAAGCTTTCCAAAAAAAAAAAAAAAAAATCCGAGAACACAGTT
CATGTTCATTATCTCTGATTTATGGAGGGGGATTTTAGAAGAGTATATTTGGTGGGACAC
CCATTAAAATCATTTTCTATATAAGCTTACCATGAGCTGCACTTTTTGGGGGTGGGAAAG
GTGAATGCTGGTCTGGGGAGGGGGACAAGGGCAGCAGGGGCCTGTCACAGAAGGGGGTTC
GTGGCTGTTGGGGAGAAGGTTCTGTAGCATAAACCTCATCCCATCAGCCAAGGGGACTTA
TTCTAAGAGAAGTTGCATGTGAGGAATGGTTGCCAGTGTTCTAGATCGACAAGGTGTTAA
TTTCTCCATAGGTTGTAACTTTAACAATAAATTATGATGCACTAGTATTTCTTAGAGGAA
ACTGTTCCTTCCAGCTAGGAAAGGGAGTAGGCATGTGTTGGCAAAGGCTGTTAAATAGAA
GCAGTGGCGTCTGTTATGCTAATAGTATGTTATGTGACTGCTGTTCTTGTTTTCATGGTT
ACATGCATTTAGAGCTTTGTATTTCATTTGTCCTTTTCTGTTAAAACTTCGATTTTTAAA
AGAAAAAAAAGCAACCCCATTCAAGTTGTCCATTAATTCTGTCAGCTTATATATCTGTCA
TTTGTAAATCTCTTCATACTATCGTGTTTTCTCCTTTTTTAATGATTGATACAGTATCCT
AATTATGAGGTTATTTTGTACTTGTCTTAATACCTTGAGTGTAATAAAAATGGCTTAAGA
AAAAAAAAAAAATTCTTTGACTTCCATCAGAAATCCTGATGTTGCCTAAATCTTCTGTTC
CTAGGCAACCTTCTTGCCATAATGAAGAGCATGGAATGCAATGGCCATTTGTTCTTTTAT
TCACTTAGGGTCCTGGATCCTAATAACTTAAGCCCTGATTACCAGGTTTGAACTAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTTTTGACCCAGTGAAAGCTTTCCAAAAAAAAAAAAAAAAAATCCGAGAACACAGTT
CATGTTCATTATCTCTGATTTATGGAGGGGGATTTTAGAAGAGTATATTTGGTGGGACAC
CCATTAAAATCATTTTCTATATAAGCTTACCATGAGCTGCACTTTTTGGGGGTGGGAAAG
GTGAATGCTGGTCTGGGGAGGGGGACAAGGGCAGCAGGGGCCTGTCACAGAAGGGGGTTC
GTGGCTGTTGGGGAGAAGGTTCTGTAGCATAAACCTCATCCCATCAGCCAAGGGGACTTA
TTCTAAGAGAAGTTGCATGTGAGGAATGGTTGCCAGTGTTCTAGATCGACAAGGTGTTAA
TTTCTCCATAGGTTGTAACTTTAACAATAAATTATGATGCACTAGTATTTCTTAGAGGAA
ACTGTTCCTTCCAGCTAGGAAAGGGAGTAGGCATGTGTTGGCAAAGGCTGTTAAATAGAA
GCAGTGGCGTCTGTTATGCTAATAGTATGTTATGTGACTGCTGTTCTTGTTTTCATGGTT
ACATGCATTTAGAGCTTTGTATTTCATTTGTCCTTTTCTGTTAAAACTTCGATTTTTAAA
AGAAAAAAAAGCAACCCCATTCAAGTTGTCCATTAATTCTGTCAGCTTATATATCTGTCA
TTTGTAAATCTCTTCATACTATCGTGTTTTCTCCTTTTTTAATGATTGATACAGTATCCT
AATTATGAGGTTATTTTGTACTTGTCTTAATACCTTGAGTGTAATAAAAATGGCTTAAGA
AAAAAAAAAAAATTCTTTGACTTCCATCAGAAATCCTGATGTTGCCTAAATCTTCTGTTC
CTAGGCAACCTTCTTGCCATAATGAAGAGCATGGAATGCAATGGCCATTTGTTCTTTTAT
TCACTTAGGGTCCTGGATCCTAATAACTTAAGCCCTGATTACCAGGTTTGAACTAGAATT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               3-121, - strand, RNAz p=0.763624
               

               
               160-319, - strand, RNAz p=0.949017
               

               
               392-495, + strand, RNAz p=0.553811

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.763624
               

               
               160-319, - strand, RNAz p=0.949017
               

               
               392-495, + strand, RNAz p=0.553811

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               226-311, + strand, RNAmicro p=0.999998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               226-311, + strand, RNAmicro p=0.999998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-960, gnl|bosTau2|chr1 (98677556-98676604)
               

               
               3-960, gnl|Hg17|chr3 (15272121-15271193)
               

               
               3-960, gnl|Mm7|chr14 (28804152-28803303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-960, gnl|bosTau2|chr1 (98677556-98676604)
               

               
               3-960, gnl|Hg17|chr3 (15272121-15271193)
               

               
               3-960, gnl|Mm7|chr14 (28804152-28803303)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               gul (0.532765)
               

               
               mga (0.480615)
               

               
               spc (0.453463)
               

               
               kid (0.389206)
               

               
               eye (0.341006)
               

               
               isp (0.300752)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               mga (0.480615)
               

               
               spc (0.453463)
               

               
               kid (0.389206)
               

               
               eye (0.341006)
               

               
               isp (0.300752)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	3-121, - strand, RNAz p=0.763624
	160-319, - strand, RNAz p=0.949017
	392-495, + strand, RNAz p=0.553811

	3-960, gnl\|bosTau2\|chr1 (98677556-98676604)
	3-960, gnl\|Hg17\|chr3 (15272121-15271193)
	3-960, gnl\|Mm7\|chr14 (28804152-28803303)

	gul (0.532765)
	mga (0.480615)
	spc (0.453463)
	kid (0.389206)
	eye (0.341006)
	isp (0.300752)
	ssp (0.271039)
	ova (0.258264)
	ece (0.229305)
	fcc (0.197785)
	col (0.195008)
	nep (0.183925)
	mgm (0.180343)
	fbs (0.175346)
	fhi (0.169578)
	cki (0.165235)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	pgl (0.118483)
	cty (0.10408)
	ldo (0.0970026)