Non-Coding RNA Search

Ss1.1-rgul0113_l23.5

Sequence:


               
               GCAAATAAGCCTGCATTAACGACACCTTTTCTCCATTCACTTTCTATTTACCAATTAGGA
AGCAACCTTTTGGTTTATATATATTTTTTTTAATACCTCAGTGCTGCAAGTATCACCAGA
GAGGCTATGAAAGAATTTTTTTTTTAATTTATTGTAGATGTACACAGAATTTTAAAAAAT
AAAAAGTATAAACATCGCTGCACTGTGACTGGTGGGAAAAACTGACAGTTTCCTGTTTGC
ACATGTTTGACATTTGGCTGTTATAATATATGGTCCTCAGTTGGGGAAAGATACTTATGA
TGAAGGATATTTTTTAATTTAACTTTTTTTTAATATTGGTAATAGGTCGGCAACAGCAAC
TATAGAAGTACAAGTCAATAGATGGCATTAAAACATACTGTAGTGTGGATATATATTTTT
TTTCTTTTTTAAAATGTGATATCGACGTTTTATTAATATTTTTTAAATTGTTACGTTTAT
AAATTTGGTACTTAAGGCACAGCCAGTATGAGACACTGAATGCGACATTTATTATAAAGA
GCTGCTGCACTCCTATTTTTATAAATTTTACTAACCAAGTAGACTAAATGTAGACATTCA
CAGACATGGTAGGGCAAAAGCATCTTCAAGCAAAAGGCTCCAAAATGCTAACTCAGAAAG
AAAGAAAAAAAGCCTTTTTCTCCATTCTAGTTAAACAGCGACAACATTTTTTTTTTTTTT
TAAATCATGTTCTTTGTTTTTGCAATAAAATGGTAGGTTGTTTGGCGAGGGTTCTTTTCA
TTTTTCTTTCTTTCTTGTTGTAGTTCCAAACAACCACGTGAAAATGCTGGGCGCTTTTAA
AATATCAAAACTCGTTCAAGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATAAGCCTGCATTAACGACACCTTTTCTCCATTCACTTTCTATTTACCAATTAGGA
AGCAACCTTTTGGTTTATATATATTTTTTTTAATACCTCAGTGCTGCAAGTATCACCAGA
GAGGCTATGAAAGAATTTTTTTTTTAATTTATTGTAGATGTACACAGAATTTTAAAAAAT
AAAAAGTATAAACATCGCTGCACTGTGACTGGTGGGAAAAACTGACAGTTTCCTGTTTGC
ACATGTTTGACATTTGGCTGTTATAATATATGGTCCTCAGTTGGGGAAAGATACTTATGA
TGAAGGATATTTTTTAATTTAACTTTTTTTTAATATTGGTAATAGGTCGGCAACAGCAAC
TATAGAAGTACAAGTCAATAGATGGCATTAAAACATACTGTAGTGTGGATATATATTTTT
TTTCTTTTTTAAAATGTGATATCGACGTTTTATTAATATTTTTTAAATTGTTACGTTTAT
AAATTTGGTACTTAAGGCACAGCCAGTATGAGACACTGAATGCGACATTTATTATAAAGA
GCTGCTGCACTCCTATTTTTATAAATTTTACTAACCAAGTAGACTAAATGTAGACATTCA
CAGACATGGTAGGGCAAAAGCATCTTCAAGCAAAAGGCTCCAAAATGCTAACTCAGAAAG
AAAGAAAAAAAGCCTTTTTCTCCATTCTAGTTAAACAGCGACAACATTTTTTTTTTTTTT
TAAATCATGTTCTTTGTTTTTGCAATAAAATGGTAGGTTGTTTGGCGAGGGTTCTTTTCA
TTTTTCTTTCTTTCTTGTTGTAGTTCCAAACAACCACGTGAAAATGCTGGGCGCTTTTAA
AATATCAAAACTCGTTCAAGGAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               731-830, + strand, RNAz p=0.99995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               731-830, + strand, RNAz p=0.99995

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-864, gnl|bosTau2|chr19 (3934708-3933842)
               

               
               5-864, gnl|Hg17|chr17 (53113289-53114153)
               

               
               5-864, gnl|Mm7|chr11 (88413183-88412255)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-864, gnl|bosTau2|chr19 (3934708-3933842)
               

               
               5-864, gnl|Hg17|chr17 (53113289-53114153)
               

               
               5-864, gnl|Mm7|chr11 (88413183-88412255)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               pgl (0.35545)
               

               
               sme (0.305437)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               sme (0.305437)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	5-864, gnl\|bosTau2\|chr19 (3934708-3933842)
	5-864, gnl\|Hg17\|chr17 (53113289-53114153)
	5-864, gnl\|Mm7\|chr11 (88413183-88412255)

	pgl (0.35545)
	sme (0.305437)
	gul (0.177588)
	spl (0.143184)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)