Ss1.1-rgul0114_f23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTCTCGGGCTCACGCGCCCCTGCGCACGCCCGGGCGCCTTTGAGCCCCAGTCGTTGG GCCCCAGCCCGGGGTCTCCGGCTGTGCGCGAGGCAAGATGTTGAGGCGCAGCTTGGAAAA CCGGGACGCTCAAACGAAACAACTGCAAGATGCCGTCACAAACGTGGAGAAGCATTTTGG AGAACTGTGCCAAATCTTTGCTGCTTATGTGCGGAAAACTGCCAGACTGCGAGACAAAGC AGACCTCCTGGTGAATGAAATCAACGTATATGCCTCCACAGAGACCCCAAATTTAAAGCA GGGCCTGAAAAACTTTGCTGACGAGTTTGCCAAACTTCAGGATTATCGACAAGCAGAGGT TGAAAGACTTGAAGCCAAAGTAGTTGAACCTTTGAAAGCTTATGGAACCATTGTAAAAAT GAAACGAGATGACCTCAAAGCAACATTAACAGCAAGGAATCGAGAAGCTAAACAGTTAAC TCAGTTAGAAAGAACACGTCAGAGAAACCCATCTGATCGACATGTTATTTCACAGGCAGA AACTGAATTACAGAGAGCTACCATGGATGCTACCCGAACAACTCGCCATCTGGAGGAAAC TATTGACAGTTTTGAAAAGCAGAAAATAAAGGATATAAAGACAATATTTTCAGAATTTAT CACCATCGAAATGTTATTTCATGGCAAAGCTTTAGAGGTCTACACTTCTGCCTACCAAAA TATACAGAAGATTGATGAAGAAGAAGATTTAGAGGTTTTCCGAAATTCTCTGTGTCCACC AGATTATTCATCTCGTTTAGATATCGTAAGAGCAAATTCAAAGTCACCTCTTCAGAGATC ACTGTCAACTAAGTGTGTATCTGGAACAGGACAGGTATCCACCTGTCGACTAAAAAAAGA TCAACAAACAGAAGATGATGATGATGAAGAGGATGAAGACTTAGACATTACCGAAGAAGA AAATTAATTTTCTTATGTAAACTTTGCATTTCCATTTTCATCTTAAATGACTTGATATCC AGAATTACTCAACTGTAAAACTTTATACTGGCTTGATACATTAAACCTCAAGATGAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTCTCGGGCTCACGCGCCCCTGCGCACGCCCGGGCGCCTTTGAGCCCCAGTCGTTGG GCCCCAGCCCGGGGTCTCCGGCTGTGCGCGAGGCAAGATGTTGAGGCGCAGCTTGGAAAA CCGGGACGCTCAAACGAAACAACTGCAAGATGCCGTCACAAACGTGGAGAAGCATTTTGG AGAACTGTGCCAAATCTTTGCTGCTTATGTGCGGAAAACTGCCAGACTGCGAGACAAAGC AGACCTCCTGGTGAATGAAATCAACGTATATGCCTCCACAGAGACCCCAAATTTAAAGCA GGGCCTGAAAAACTTTGCTGACGAGTTTGCCAAACTTCAGGATTATCGACAAGCAGAGGT TGAAAGACTTGAAGCCAAAGTAGTTGAACCTTTGAAAGCTTATGGAACCATTGTAAAAAT GAAACGAGATGACCTCAAAGCAACATTAACAGCAAGGAATCGAGAAGCTAAACAGTTAAC TCAGTTAGAAAGAACACGTCAGAGAAACCCATCTGATCGACATGTTATTTCACAGGCAGA AACTGAATTACAGAGAGCTACCATGGATGCTACCCGAACAACTCGCCATCTGGAGGAAAC TATTGACAGTTTTGAAAAGCAGAAAATAAAGGATATAAAGACAATATTTTCAGAATTTAT CACCATCGAAATGTTATTTCATGGCAAAGCTTTAGAGGTCTACACTTCTGCCTACCAAAA TATACAGAAGATTGATGAAGAAGAAGATTTAGAGGTTTTCCGAAATTCTCTGTGTCCACC AGATTATTCATCTCGTTTAGATATCGTAAGAGCAAATTCAAAGTCACCTCTTCAGAGATC ACTGTCAACTAAGTGTGTATCTGGAACAGGACAGGTATCCACCTGTCGACTAAAAAAAGA TCAACAAACAGAAGATGATGATGATGAAGAGGATGAAGACTTAGACATTACCGAAGAAGA AAATTAATTTTCTTATGTAAACTTTGCATTTCCATTTTCATCTTAAATGACTTGATATCC AGAATTACTCAACTGTAAAACTTTATACTGGCTTGATACATTAAACCTCAAGATGAAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 816-941, - strand, RNAz p=0.915699 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 816-941, - strand, RNAz p=0.915699 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 8-124, gnl|bosTau2|chr14 (43849796-43849683) | |
| 8-124, gnl|Hg17|chr8 (94781964-94782078) | |
| 8-124, gnl|Mm7|chr4 (12098985-12098844) | |
| 139-360, gnl|bosTau2|chr14 (43849263-43849042) | |
| 139-360, gnl|canFam2|chr29 (41587717-41587966) | |
| 139-360, gnl|danRer3|chr19 (49753294-49753055) | |
| 139-360, gnl|dasNov1|scaffold_2328 (8953-9206) | |
| 139-360, gnl|echTel1|scaffold_158243 (4266-4029) | |
| 139-360, gnl|fr1|chrUn (275419084-275418847) | |
| 139-360, gnl|galGal2|chr2 (125171410-125171659) | |
| 139-360, gnl|hg17|chr8 (94782629-94782882) | |
| 139-360, gnl|Hg17|chr8 (94782643-94782864) | |
| 139-360, gnl|loxAfr1|scaffold_5527 (29693-29946) | |
| 139-360, gnl|mm7|chr4 (12098366-12098113) | |
| 139-360, gnl|Mm7|chr4 (12098350-12098129) | |
| 139-360, gnl|monDom2|scaffold_3 (72152682-72152431) | |
| 139-360, gnl|oryCun1|scaffold_140622 (12684-12937) | |
| 139-360, gnl|panTro1|chr7 (97009131-97009384) | |
| 139-360, gnl|rheMac2|chr8 (96274921-96275174) | |
| 139-360, gnl|rn3|chr5 (26419918-26419665) | |
| 139-360, gnl|tetNig1|chr21 (2678145-2677908) | |
| 139-360, gnl|xenTro1|scaffold_59 (1085222-1084984) | |
| 417-941, gnl|bosTau2|chr10 (59460870-59461376) | |
| 417-941, gnl|Hg17|chr15 (39243293-39243832) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-124, gnl|bosTau2|chr14 (43849796-43849683) | |
| 8-124, gnl|Hg17|chr8 (94781964-94782078) | |
| 8-124, gnl|Mm7|chr4 (12098985-12098844) | |
| 139-360, gnl|bosTau2|chr14 (43849263-43849042) | |
| 139-360, gnl|canFam2|chr29 (41587717-41587966) | |
| 139-360, gnl|danRer3|chr19 (49753294-49753055) | |
| 139-360, gnl|dasNov1|scaffold_2328 (8953-9206) | |
| 139-360, gnl|echTel1|scaffold_158243 (4266-4029) | |
| 139-360, gnl|fr1|chrUn (275419084-275418847) | |
| 139-360, gnl|galGal2|chr2 (125171410-125171659) | |
| 139-360, gnl|hg17|chr8 (94782629-94782882) | |
| 139-360, gnl|Hg17|chr8 (94782643-94782864) | |
| 139-360, gnl|loxAfr1|scaffold_5527 (29693-29946) | |
| 139-360, gnl|mm7|chr4 (12098366-12098113) | |
| 139-360, gnl|Mm7|chr4 (12098350-12098129) | |
| 139-360, gnl|monDom2|scaffold_3 (72152682-72152431) | |
| 139-360, gnl|oryCun1|scaffold_140622 (12684-12937) | |
| 139-360, gnl|panTro1|chr7 (97009131-97009384) | |
| 139-360, gnl|rheMac2|chr8 (96274921-96275174) | |
| 139-360, gnl|rn3|chr5 (26419918-26419665) | |
| 139-360, gnl|tetNig1|chr21 (2678145-2677908) | |
| 139-360, gnl|xenTro1|scaffold_59 (1085222-1084984) | |
| 417-941, gnl|bosTau2|chr10 (59460870-59461376) | |
| 417-941, gnl|Hg17|chr15 (39243293-39243832) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| tes (0.415628) | |
| mgp (0.230681) | |
| gul (0.177588) | |
| eye (0.170503) | |
| cki (0.165235) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| mgp (0.230681) | |
| gul (0.177588) | |
| eye (0.170503) | |
| cki (0.165235) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) |