Non-Coding RNA Search

Ss1.1-rgul0115_e24.5

Sequence:


               
               AGAGTATTTAATATTCTCTTGTTTCCTTGGGATAAACCATGTGAGAATTGCTCCTATGCC
ATGGATGTCAAAGGTCCACCTTAGTTTTTATTTCCCCAGTGATCAGAAACATTGATACCA
ATCCCTATTAAAAATTAGTTGGGGAAAATATTTATCTGCAGTGTATTACTGTATATTAAA
CTGAAATAGTCCATTAAAGGATTTTTTTACAAATTTATTTTGGATTGAAAATATCAACAC
CAAATCAGTTTTTAGACCAGGTTGCAACTTTTCAGTAGAAAGAGCCTTTGTGTCACATTG
AGGCACCTTGCAAAGCTGTGATAAGATGAGAAAGAGTACTCTGTGAAGACAGCATAGCCG
TGGGTTCTGGTTCCTTGCACCTTGTGTAGTACCCTGTGTTTCTGTGGTGTTCTCTCCTGA
GCATGAAAATGATCATTATCCAATTTGTATTTCCTTGGTACATATTTTAAAAACACAGTC
ATTGACTTTACAATTCAGAAATAAAGTTTGGCAAAGCCTATTTTGTAAACAAGTTAATTT
TATAATGTAAAAAAAAAAATTACTCTAACCTTGACTTGTTATTTGCACTTTCATAGTCTA
TACTTGATACATTCCCACTTTATATACAGTAGGACTCTACAAACGTGTAGATGTTTGGCC
AAATGAATGCTGTTAATAATATGTAAAATTCTTTGATTAAACATTTATTACTTAAACTAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTATTTAATATTCTCTTGTTTCCTTGGGATAAACCATGTGAGAATTGCTCCTATGCC
ATGGATGTCAAAGGTCCACCTTAGTTTTTATTTCCCCAGTGATCAGAAACATTGATACCA
ATCCCTATTAAAAATTAGTTGGGGAAAATATTTATCTGCAGTGTATTACTGTATATTAAA
CTGAAATAGTCCATTAAAGGATTTTTTTACAAATTTATTTTGGATTGAAAATATCAACAC
CAAATCAGTTTTTAGACCAGGTTGCAACTTTTCAGTAGAAAGAGCCTTTGTGTCACATTG
AGGCACCTTGCAAAGCTGTGATAAGATGAGAAAGAGTACTCTGTGAAGACAGCATAGCCG
TGGGTTCTGGTTCCTTGCACCTTGTGTAGTACCCTGTGTTTCTGTGGTGTTCTCTCCTGA
GCATGAAAATGATCATTATCCAATTTGTATTTCCTTGGTACATATTTTAAAAACACAGTC
ATTGACTTTACAATTCAGAAATAAAGTTTGGCAAAGCCTATTTTGTAAACAAGTTAATTT
TATAATGTAAAAAAAAAAATTACTCTAACCTTGACTTGTTATTTGCACTTTCATAGTCTA
TACTTGATACATTCCCACTTTATATACAGTAGGACTCTACAAACGTGTAGATGTTTGGCC
AAATGAATGCTGTTAATAATATGTAAAATTCTTTGATTAAACATTTATTACTTAAACTAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-189, + strand, RNAz p=0.967175
               

               
               601-719, - strand, RNAz p=0.615087

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-189, + strand, RNAz p=0.967175
               

               
               601-719, - strand, RNAz p=0.615087

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-719, gnl|bosTau2|chr4 (1296838-1297552)
               

               
               1-719, gnl|Hg17|chr7 (91674622-91675348)
               

               
               1-719, gnl|Mm7|chr5 (3697110-3696423)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-719, gnl|bosTau2|chr4 (1296838-1297552)
               

               
               1-719, gnl|Hg17|chr7 (91674622-91675348)
               

               
               1-719, gnl|Mm7|chr5 (3697110-3696423)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbe (0.717703)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               lyg (0.399308)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               lyg (0.399308)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	79-189, + strand, RNAz p=0.967175
	601-719, - strand, RNAz p=0.615087

	1-719, gnl\|bosTau2\|chr4 (1296838-1297552)
	1-719, gnl\|Hg17\|chr7 (91674622-91675348)
	1-719, gnl\|Mm7\|chr5 (3697110-3696423)

	cbe (0.717703)
	mga (0.480615)
	fco (0.471624)
	lyg (0.399308)
	ret (0.257467)
	spc (0.226732)
	sag (0.182715)
	gul (0.177588)
	eli (0.151814)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	thg (0.126791)
	tra (0.123092)