Non-Coding RNA Search

Ss1.1-rgul0117_c18.5

Sequence:


               
               TCCACGGAGGAACTGCCCCCTCCGGTGCACTTGTCCAAGCCAGGGGAACACATGGATGTG
TACGTGCCCGTGGCCTGTCACCCGGGCTACTTTGTCATCCAGCCATGGCAAGAGATACAC
AAGCTGGAAGTTCTGATGGAAGAGATGATTCTGTATTACAGTGTGTCTGAGGAGCGCCAC
GTGGCAGTGGAGAAAGACCAGGTGTACGCTGCAAAAGTGGAAAATAAGTGGCACAGGGTG
CTTTTAAAAGGAATCCTGACCAATGGGCTGGTGTCCGTGTATGAGCTGGACTATGGCAAG
CACGAGTTAGTCAACATAAGAAAAGTGCAGCCTCTGGTGGACATGTTTCGAAAGCTGCCG
TTCCAAGCAGTCACAGCTCAACTAGCAGGAGTGAAGTGCAACCAGTGGTCTGAGGAGGCT
TCGATGGTGTTTCGAAATCATGTGGAGAAGAAACCCCTGGTGGCACTGGTGCAGACGGTT
ATAGAAAATGCTACCCCTTGGGACCGGAAAGTAGTGGTCTATCTAGTGGACACATCGCTG
CCAGACACAGATATCTGGATTCATGATTTTATGTCAGAGTATCTGGTAGAGCTTTCCAAA
GTTAACTAATCACTGCTTCTGAGACCTTGACAACTAATTCAGATTTTTTAGCAATAACAA
AATGTAGTAGGCTTTAAAAGAAAATCTTACCTCTGCTACATGGCCTGGCTGCTGTGAAAG
ATTGAAAAGAATATGCTTATGTTTAATGAAAGATATTTAACAAGTTTTGTTTTAACAGAG
TTGACTTTACAGAAGAGAATTGCACTTGACTTATTACTATAATATTAGAATAAAAATGTT
TATCAGTATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACGGAGGAACTGCCCCCTCCGGTGCACTTGTCCAAGCCAGGGGAACACATGGATGTG
TACGTGCCCGTGGCCTGTCACCCGGGCTACTTTGTCATCCAGCCATGGCAAGAGATACAC
AAGCTGGAAGTTCTGATGGAAGAGATGATTCTGTATTACAGTGTGTCTGAGGAGCGCCAC
GTGGCAGTGGAGAAAGACCAGGTGTACGCTGCAAAAGTGGAAAATAAGTGGCACAGGGTG
CTTTTAAAAGGAATCCTGACCAATGGGCTGGTGTCCGTGTATGAGCTGGACTATGGCAAG
CACGAGTTAGTCAACATAAGAAAAGTGCAGCCTCTGGTGGACATGTTTCGAAAGCTGCCG
TTCCAAGCAGTCACAGCTCAACTAGCAGGAGTGAAGTGCAACCAGTGGTCTGAGGAGGCT
TCGATGGTGTTTCGAAATCATGTGGAGAAGAAACCCCTGGTGGCACTGGTGCAGACGGTT
ATAGAAAATGCTACCCCTTGGGACCGGAAAGTAGTGGTCTATCTAGTGGACACATCGCTG
CCAGACACAGATATCTGGATTCATGATTTTATGTCAGAGTATCTGGTAGAGCTTTCCAAA
GTTAACTAATCACTGCTTCTGAGACCTTGACAACTAATTCAGATTTTTTAGCAATAACAA
AATGTAGTAGGCTTTAAAAGAAAATCTTACCTCTGCTACATGGCCTGGCTGCTGTGAAAG
ATTGAAAAGAATATGCTTATGTTTAATGAAAGATATTTAACAAGTTTTGTTTTAACAGAG
TTGACTTTACAGAAGAGAATTGCACTTGACTTATTACTATAATATTAGAATAAAAATGTT
TATCAGTATAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61842349|ref|XP_584808.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842349|ref|XP_584808.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-229, gnl|bosTau2|chr8 (32706846-32707067)
               

               
               8-229, gnl|Hg17|chr9 (97324969-97325190)
               

               
               8-229, gnl|Mm7|chr4 (46039754-46039975)
               


               
               387-852, gnl|bosTau2|chr8 (32713235-32713718)
               

               
               387-852, gnl|Hg17|chr9 (97337498-97337961)
               

               
               387-852, gnl|Mm7|chr4 (46048108-46048574)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-229, gnl|bosTau2|chr8 (32706846-32707067)
               

               
               8-229, gnl|Hg17|chr9 (97324969-97325190)
               

               
               8-229, gnl|Mm7|chr4 (46039754-46039975)
               


               
               387-852, gnl|bosTau2|chr8 (32713235-32713718)
               

               
               387-852, gnl|Hg17|chr9 (97337498-97337961)
               

               
               387-852, gnl|Mm7|chr4 (46048108-46048574)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cte (4.3911)
               

               
               rec (0.865351)
               

               
               tes (0.415628)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               csk (0.281492)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (4.3911)
               

               
               rec (0.865351)
               

               
               tes (0.415628)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               csk (0.281492)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	8-229, gnl\|bosTau2\|chr8 (32706846-32707067)
	8-229, gnl\|Hg17\|chr9 (97324969-97325190)
	8-229, gnl\|Mm7\|chr4 (46039754-46039975)

	387-852, gnl\|bosTau2\|chr8 (32713235-32713718)
	387-852, gnl\|Hg17\|chr9 (97337498-97337961)
	387-852, gnl\|Mm7\|chr4 (46048108-46048574)

	cte (4.3911)
	rec (0.865351)
	tes (0.415628)
	cje (0.330469)
	isp (0.300752)
	csk (0.281492)
	mas (0.210305)
	cmu (0.186393)
	sto (0.179824)
	gul (0.177588)
	sin (0.174948)
	lun (0.150489)
	bfe (0.149858)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)
	jej (0.0989218)