Non-Coding RNA Search

Ss1.1-rgul0117_d8.5

Sequence:


               
               CTTTTTTAGCTCTGTGGTGCTTTTCCATCAGTAGAACATGAAGTAAATGTCAGCATCCCA
CTCTAATCTTTAATATCCCCCGGTGCCTCCCATGGGCTATCCTAATGGAATGTCCAGAAT
CCACTGGTTCATTGGCACCAGTATTGACAATAAATTTGGAACCAACTGTGGACATTGACC
CTGCATGAAAGAGCCTCTGCACCCTCTAAGATCAGCACATTTTCCCACCCTAATGATGAA
TCATGGGGAGTGATATGTAGTGGTGTTGATGGTGAACCTTTCCTATTGGCTTCTTTGCAT
GCAGCCTAGCAAGATCCATAATCTTTGTCTCATCCTGGACAGCATGAGACGGCTCCCAAA
CATCCTTCATAATTCTCTGCAGGAAAAAATTTGCTGGGGCCCAAAATGTGGCATGTATAG
CCCAATGAGTTTATCACATGTGGAGCAAGATGGGATATTCTATAGCTGATCTGCCCTTCA
AGACTTTAACCCTTCAAAATACCTTCTGATGTTCCATATGTAGCATACACATAATGCCAA
GACCATGCTTGTGTTGCCTGATACATAGTTGACAATGGGTAATTCTACTCTAAATCTCCC
CTACCAATTGGCTAGGATGCCTATTAGGAACTCATTTTGGTGCTCATTTTTTTGGGATCC
CCATACTGGACTGTTTTCAAGAATGGCATGAATGGTAACCAACTGAGTGCTACCTGACTG
TTAAAGTTTATAAAGGCTTAGTTCTGGAAGAACTAAAGGAGACCACTGGTTTGTGTGTGG
AGTCTGGCCTAAATCCAACCAATCTCTGGATCTCAGCACATCTTTGCTGGCAGGAGGGAG
CCCAGGATGCATGTATGGCTGATTGAGCAGAGGATTCTCTAGTCCCAGCAACCATGCACC
ATGCACTTATGAAGACTCAGATTTCTAGGCCATATGAAATATACCCTTGTAACATCATTG
TATTATTTCAATAAATAGCCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTTAGCTCTGTGGTGCTTTTCCATCAGTAGAACATGAAGTAAATGTCAGCATCCCA
CTCTAATCTTTAATATCCCCCGGTGCCTCCCATGGGCTATCCTAATGGAATGTCCAGAAT
CCACTGGTTCATTGGCACCAGTATTGACAATAAATTTGGAACCAACTGTGGACATTGACC
CTGCATGAAAGAGCCTCTGCACCCTCTAAGATCAGCACATTTTCCCACCCTAATGATGAA
TCATGGGGAGTGATATGTAGTGGTGTTGATGGTGAACCTTTCCTATTGGCTTCTTTGCAT
GCAGCCTAGCAAGATCCATAATCTTTGTCTCATCCTGGACAGCATGAGACGGCTCCCAAA
CATCCTTCATAATTCTCTGCAGGAAAAAATTTGCTGGGGCCCAAAATGTGGCATGTATAG
CCCAATGAGTTTATCACATGTGGAGCAAGATGGGATATTCTATAGCTGATCTGCCCTTCA
AGACTTTAACCCTTCAAAATACCTTCTGATGTTCCATATGTAGCATACACATAATGCCAA
GACCATGCTTGTGTTGCCTGATACATAGTTGACAATGGGTAATTCTACTCTAAATCTCCC
CTACCAATTGGCTAGGATGCCTATTAGGAACTCATTTTGGTGCTCATTTTTTTGGGATCC
CCATACTGGACTGTTTTCAAGAATGGCATGAATGGTAACCAACTGAGTGCTACCTGACTG
TTAAAGTTTATAAAGGCTTAGTTCTGGAAGAACTAAAGGAGACCACTGGTTTGTGTGTGG
AGTCTGGCCTAAATCCAACCAATCTCTGGATCTCAGCACATCTTTGCTGGCAGGAGGGAG
CCCAGGATGCATGTATGGCTGATTGAGCAGAGGATTCTCTAGTCCCAGCAACCATGCACC
ATGCACTTATGAAGACTCAGATTTCTAGGCCATATGAAATATACCCTTGTAACATCATTG
TATTATTTCAATAAATAGCCTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-981, gnl|bosTau2|chr18 (14451701-14450719)
               

               
               4-981, gnl|Hg17|chr16 (67157546-67158524)
               

               
               4-981, gnl|Mm7|chr8 (105025455-105026374)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-981, gnl|bosTau2|chr18 (14451701-14450719)
               

               
               4-981, gnl|Hg17|chr16 (67157546-67158524)
               

               
               4-981, gnl|Mm7|chr8 (105025455-105026374)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

	4-981, gnl\|bosTau2\|chr18 (14451701-14450719)
	4-981, gnl\|Hg17\|chr16 (67157546-67158524)
	4-981, gnl\|Mm7\|chr8 (105025455-105026374)

	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	liv (0.146284)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)