Non-Coding RNA Search

Ss1.1-rgul0117_e7.5

Sequence:


               
               TGTTGGTTGGGTGTATCAGTCTAAGAAGAAGCTCCTAGGTTTTAAACATGTGCTAGTCAG
TGTCATGAAGATAAACCCTTATCATAAACTCGTTGTAGACTAGCTATACATCACTACAAT
GAAAGTATATTTTAAGAATTGTAGTGGTTTCATCGTTGTGTTAAAGTACTTGTTTCTCTT
CTGACACACTTTATGCATGTATCAGTGATAGAAAAGAATGGAGTATAGAACTAAGTAAGA
TTGCACTTACTAGTGTCCTCTTTGGAAAGTCTATTTATAGAAAGCAGTAGGAACACTAAA
ATGGTGCTGAGAAGTTCTTAAAAGTTAAGGAAAATGCAGTACAAACTTGCTGGCTTTTAT
ACACTAACAATAAAATACATTTAACGGGACCAGAGAAGAAGGAGGCATTCTGGGGGAAAC
TTAAATTCCTCAAATATAAAAAAGAACTTTGATTTTCTGTAGTAACTTTGTCAGGATCCC
ATGAACATTGCTTATCTTGATGTCTCAATTTATGATGGATGAAGGGGAACTTCTCTAGCC
TGTTCGGTAGCAGATAGAATTGTACTTAATGAGTCCTATTATGATGTTTAGTACTCTGTT
ATAAGGCTATTTCTATAATGGAGCTGAAAGCTCCAGCAGACATTACATTGCTGATGCATA
CAGAAACATGAGTATATTAAAATAGGAACATTTGCAAGACCATTTAATCAGCAGTTTAAT
CAAAATTATGCTTTTGGTACAGTGTTTAGGTACCATAACTGTATTGGAATATTTGTACAA
TGTTAAATATTTTTAATAAAATCTAACATGTTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGTTGGGTGTATCAGTCTAAGAAGAAGCTCCTAGGTTTTAAACATGTGCTAGTCAG
TGTCATGAAGATAAACCCTTATCATAAACTCGTTGTAGACTAGCTATACATCACTACAAT
GAAAGTATATTTTAAGAATTGTAGTGGTTTCATCGTTGTGTTAAAGTACTTGTTTCTCTT
CTGACACACTTTATGCATGTATCAGTGATAGAAAAGAATGGAGTATAGAACTAAGTAAGA
TTGCACTTACTAGTGTCCTCTTTGGAAAGTCTATTTATAGAAAGCAGTAGGAACACTAAA
ATGGTGCTGAGAAGTTCTTAAAAGTTAAGGAAAATGCAGTACAAACTTGCTGGCTTTTAT
ACACTAACAATAAAATACATTTAACGGGACCAGAGAAGAAGGAGGCATTCTGGGGGAAAC
TTAAATTCCTCAAATATAAAAAAGAACTTTGATTTTCTGTAGTAACTTTGTCAGGATCCC
ATGAACATTGCTTATCTTGATGTCTCAATTTATGATGGATGAAGGGGAACTTCTCTAGCC
TGTTCGGTAGCAGATAGAATTGTACTTAATGAGTCCTATTATGATGTTTAGTACTCTGTT
ATAAGGCTATTTCTATAATGGAGCTGAAAGCTCCAGCAGACATTACATTGCTGATGCATA
CAGAAACATGAGTATATTAAAATAGGAACATTTGCAAGACCATTTAATCAGCAGTTTAAT
CAAAATTATGCTTTTGGTACAGTGTTTAGGTACCATAACTGTATTGGAATATTTGTACAA
TGTTAAATATTTTTAATAAAATCTAACATGTTCAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr2 (82852425-82853216)
               

               
               1-816, gnl|Hg17|chr1 (23377289-23376488)
               

               
               1-816, gnl|Mm7|chr4 (135723605-135724417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr2 (82852425-82853216)
               

               
               1-816, gnl|Hg17|chr1 (23377289-23376488)
               

               
               1-816, gnl|Mm7|chr4 (135723605-135724417)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

	1-816, gnl\|bosTau2\|chr2 (82852425-82853216)
	1-816, gnl\|Hg17\|chr1 (23377289-23376488)
	1-816, gnl\|Mm7\|chr4 (135723605-135724417)

	cbe (0.239234)
	mgp (0.230681)
	gul (0.177588)
	fbs (0.175346)
	fhi (0.169578)
	tbr (0.154178)
	bfe (0.149858)
	nca (0.136874)
	ret (0.128733)
	thg (0.126791)
	eru (0.120048)