Ss1.1-rgul0117_i4.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGAGTAATGAAGAAGCAGGACATCATTTTGAACAAATGCTTAAATTGTCTCAACGAT CCAAAGATGAGCTCTTTAGTATTGCCCTTTATAATTGGCTAATACAAGCTGACCTTGCAG ATAAACTGCTACAGATTGCTTCTCCATTTCTAGAGCCACATTTAGTCCGAATGGCCAAAG TTGATCAAAACAAAGTTCGTTACATGGATTTGCTCTGGAGGTATTATGAGAAGAACAGAA GTTTTAGTAATGCTGCTCGTGTCCTATCCAAATTGGCTGACATGCACAGCACAGAAATTT CACTTCAGCAGCGACTAGAGTACATTGCTCGAGCCATTCTTAGTGCCAAAAGTTCCACTG CCATTTCATCAATAGCTGCAGATGGTGAATTCCTTCATGAATTAGAAGAAAAAATGGAAG TTGCGAGGATTCAACTTCAGATACAAGAGACACTGCAGAGGCAATATTCCCATCATTCTT CTGTACAGGATGCAATTTCTCAACTAGATTCTGAGCTAATGGACATAACTAAGCTTTATG GGGAATTTGCTGACCCATTTAAACTTGCAGAGTGTAAACTTGCAATAATTCATTGTGCTG GTTATTCAGACCCTATATTGGTGCAGACACTTTGGCAAGATATCATAGAGAAAGAACTAA ACGAAAGTGTGACACTGAGCTCCCCAGACCGGATGCATGCTCTTAGTCTCAAGATTGTGC TCCTTGGCAAGATTTATGCTGGCACACCTCGCTTCTTTCCTTTAGATTTTATTGTGCAGT TCTTAGAGCAGCAAGTTTGTACTTTGAACTGGGATGTGGGTTTTGTAATACAGACAATGA ATGAAATTGGAGTGCCATTACCTAGACTACTGGAAGTATATGATCACTTGTTCAAGTCAC GGGATCCATTCTGGAATAGAATGAAGAAGCCACTGCACCTTTTGGACTGTATACATGTAC TATTGACAAGATATGTTGGGAATCCTAGCCAGGTTTTAAATTGTGAGAGGAGAAGATTCA CAAATCTCTGCCTGGATGCTGTTTGTGGTTATCTAGTTGAGCTCCAGTCTATGAGCTCCT CAGCAGCAGTACAAGCCATCACTGGGAATTTTAAATCTCTTCAGGCTAAACTAGAACGGC TTCATTAATTATTGTAATGTATTTTCATTCATGCGTTTTGATCTGTAAAATAAAAGCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGAGTAATGAAGAAGCAGGACATCATTTTGAACAAATGCTTAAATTGTCTCAACGAT CCAAAGATGAGCTCTTTAGTATTGCCCTTTATAATTGGCTAATACAAGCTGACCTTGCAG ATAAACTGCTACAGATTGCTTCTCCATTTCTAGAGCCACATTTAGTCCGAATGGCCAAAG TTGATCAAAACAAAGTTCGTTACATGGATTTGCTCTGGAGGTATTATGAGAAGAACAGAA GTTTTAGTAATGCTGCTCGTGTCCTATCCAAATTGGCTGACATGCACAGCACAGAAATTT CACTTCAGCAGCGACTAGAGTACATTGCTCGAGCCATTCTTAGTGCCAAAAGTTCCACTG CCATTTCATCAATAGCTGCAGATGGTGAATTCCTTCATGAATTAGAAGAAAAAATGGAAG TTGCGAGGATTCAACTTCAGATACAAGAGACACTGCAGAGGCAATATTCCCATCATTCTT CTGTACAGGATGCAATTTCTCAACTAGATTCTGAGCTAATGGACATAACTAAGCTTTATG GGGAATTTGCTGACCCATTTAAACTTGCAGAGTGTAAACTTGCAATAATTCATTGTGCTG GTTATTCAGACCCTATATTGGTGCAGACACTTTGGCAAGATATCATAGAGAAAGAACTAA ACGAAAGTGTGACACTGAGCTCCCCAGACCGGATGCATGCTCTTAGTCTCAAGATTGTGC TCCTTGGCAAGATTTATGCTGGCACACCTCGCTTCTTTCCTTTAGATTTTATTGTGCAGT TCTTAGAGCAGCAAGTTTGTACTTTGAACTGGGATGTGGGTTTTGTAATACAGACAATGA ATGAAATTGGAGTGCCATTACCTAGACTACTGGAAGTATATGATCACTTGTTCAAGTCAC GGGATCCATTCTGGAATAGAATGAAGAAGCCACTGCACCTTTTGGACTGTATACATGTAC TATTGACAAGATATGTTGGGAATCCTAGCCAGGTTTTAAATTGTGAGAGGAGAAGATTCA CAAATCTCTGCCTGGATGCTGTTTGTGGTTATCTAGTTGAGCTCCAGTCTATGAGCTCCT CAGCAGCAGTACAAGCCATCACTGGGAATTTTAAATCTCTTCAGGCTAAACTAGAACGGC TTCATTAATTATTGTAATGTATTTTCATTCATGCGTTTTGATCTGTAAAATAAAAGCTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 132-289, gnl|bosTau2|chr20 (24975149-24975306) | |
| 132-289, gnl|canFam2|chr4 (74590820-74590642) | |
| 132-289, gnl|danRer3|chrNA (191942246-191942081) | |
| 132-289, gnl|fr1|chrUn (77700364-77700539) | |
| 132-289, gnl|galGal2|chrZ_random (10536914-10537096) | |
| 132-289, gnl|hg17|chr5 (37339101-37339279) | |
| 132-289, gnl|Hg17|chr5 (37339276-37339119) | |
| 132-289, gnl|loxAfr1|scaffold_32878 (6887-6704) | |
| 132-289, gnl|mm7|chr15 (7975271-7975106) | |
| 132-289, gnl|Mm7|chr15 (7975107-7975264) | |
| 132-289, gnl|monDom2|scaffold_20 (34865422-34865240) | |
| 132-289, gnl|panTro1|chr4 (79420727-79420549) | |
| 132-289, gnl|rheMac2|chr6 (37140164-37140342) | |
| 132-289, gnl|rn3|chr2 (57680437-57680259) | |
| 132-289, gnl|tetNig1|chr4 (2172796-2172958) | |
| 132-289, gnl|xenTro1|scaffold_363 (894260-894092) | |
| 532-654, gnl|bosTau2|chr20 (24980294-24980416) | |
| 532-654, gnl|canFam2|chr4 (74595709-74595559) | |
| 532-654, gnl|danRer3|chrNA (191944388-191944251) | |
| 532-654, gnl|dasNov1|scaffold_6391 (4539-4689) | |
| 532-654, gnl|echTel1|scaffold_305985 (8887-8740) | |
| 532-654, gnl|fr1|chrUn (77699758-77699900) | |
| 532-654, gnl|galGal2|chrZ_random (10535343-10535493) | |
| 532-654, gnl|hg17|chr5 (37335297-37335447) | |
| 532-654, gnl|Hg17|chr5 (37335429-37335307) | |
| 532-654, gnl|loxAfr1|scaffold_32878 (12624-12475) | |
| 532-654, gnl|mm7|chr15 (7980061-7979910) | |
| 532-654, gnl|Mm7|chr15 (7979927-7980049) | |
| 532-654, gnl|monDom2|scaffold_20 (34871270-34871124) | |
| 532-654, gnl|oryCun1|scaffold_208098 (10492-10342) | |
| 532-654, gnl|panTro1|chr4 (79424528-79424378) | |
| 532-654, gnl|rheMac2|chr6 (37136349-37136499) | |
| 532-654, gnl|rn3|chr2 (57684432-57684282) | |
| 532-654, gnl|tetNig1|chr4 (2172128-2172267) | |
| 532-654, gnl|xenTro1|scaffold_363 (896326-896179) | |
| 753-903, gnl|bosTau2|chr20 (24984100-24984249) | |
| 753-903, gnl|canFam2|chr4 (74599401-74599217) | |
| 753-903, gnl|danRer3|chrNA (191946873-191946711) | |
| 753-903, gnl|dasNov1|scaffold_112062 (1200-1016) | |
| 753-903, gnl|echTel1|scaffold_305985 (13132-12955) | |
| 753-903, gnl|fr1|chrUn (77699147-77699312) | |
| 753-903, gnl|galGal2|chrZ_random (10532918-10533100) | |
| 753-903, gnl|hg17|chr5 (37330183-37330368) | |
| 753-903, gnl|Hg17|chr5 (37330338-37330187) | |
| 753-903, gnl|loxAfr1|scaffold_32878 (18997-18816) | |
| 753-903, gnl|mm7|chr15 (7981872-7981711) | |
| 753-903, gnl|Mm7|chr15 (7981717-7981866) | |
| 753-903, gnl|monDom2|scaffold_20 (34875345-34875184) | |
| 753-903, gnl|panTro1|chr4 (79427942-79427757) | |
| 753-903, gnl|rheMac2|chr6 (37132807-37132993) | |
| 753-903, gnl|rn3|chr2 (57688659-57688504) | |
| 753-903, gnl|tetNig1|chr4 (2171471-2171616) | |
| 753-903, gnl|xenTro1|scaffold_363 (899649-899490) | |
| 1008-1200, gnl|bosTau2|chr20 (24986250-24986443) | |
| 1008-1200, gnl|Hg17|chr5 (37327899-37327709) | |
| 1008-1200, gnl|Mm7|chr15 (7984437-7984629) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-289, gnl|bosTau2|chr20 (24975149-24975306) | |
| 132-289, gnl|canFam2|chr4 (74590820-74590642) | |
| 132-289, gnl|danRer3|chrNA (191942246-191942081) | |
| 132-289, gnl|fr1|chrUn (77700364-77700539) | |
| 132-289, gnl|galGal2|chrZ_random (10536914-10537096) | |
| 132-289, gnl|hg17|chr5 (37339101-37339279) | |
| 132-289, gnl|Hg17|chr5 (37339276-37339119) | |
| 132-289, gnl|loxAfr1|scaffold_32878 (6887-6704) | |
| 132-289, gnl|mm7|chr15 (7975271-7975106) | |
| 132-289, gnl|Mm7|chr15 (7975107-7975264) | |
| 132-289, gnl|monDom2|scaffold_20 (34865422-34865240) | |
| 132-289, gnl|panTro1|chr4 (79420727-79420549) | |
| 132-289, gnl|rheMac2|chr6 (37140164-37140342) | |
| 132-289, gnl|rn3|chr2 (57680437-57680259) | |
| 132-289, gnl|tetNig1|chr4 (2172796-2172958) | |
| 132-289, gnl|xenTro1|scaffold_363 (894260-894092) | |
| 532-654, gnl|bosTau2|chr20 (24980294-24980416) | |
| 532-654, gnl|canFam2|chr4 (74595709-74595559) | |
| 532-654, gnl|danRer3|chrNA (191944388-191944251) | |
| 532-654, gnl|dasNov1|scaffold_6391 (4539-4689) | |
| 532-654, gnl|echTel1|scaffold_305985 (8887-8740) | |
| 532-654, gnl|fr1|chrUn (77699758-77699900) | |
| 532-654, gnl|galGal2|chrZ_random (10535343-10535493) | |
| 532-654, gnl|hg17|chr5 (37335297-37335447) | |
| 532-654, gnl|Hg17|chr5 (37335429-37335307) | |
| 532-654, gnl|loxAfr1|scaffold_32878 (12624-12475) | |
| 532-654, gnl|mm7|chr15 (7980061-7979910) | |
| 532-654, gnl|Mm7|chr15 (7979927-7980049) | |
| 532-654, gnl|monDom2|scaffold_20 (34871270-34871124) | |
| 532-654, gnl|oryCun1|scaffold_208098 (10492-10342) | |
| 532-654, gnl|panTro1|chr4 (79424528-79424378) | |
| 532-654, gnl|rheMac2|chr6 (37136349-37136499) | |
| 532-654, gnl|rn3|chr2 (57684432-57684282) | |
| 532-654, gnl|tetNig1|chr4 (2172128-2172267) | |
| 532-654, gnl|xenTro1|scaffold_363 (896326-896179) | |
| 753-903, gnl|bosTau2|chr20 (24984100-24984249) | |
| 753-903, gnl|canFam2|chr4 (74599401-74599217) | |
| 753-903, gnl|danRer3|chrNA (191946873-191946711) | |
| 753-903, gnl|dasNov1|scaffold_112062 (1200-1016) | |
| 753-903, gnl|echTel1|scaffold_305985 (13132-12955) | |
| 753-903, gnl|fr1|chrUn (77699147-77699312) | |
| 753-903, gnl|galGal2|chrZ_random (10532918-10533100) | |
| 753-903, gnl|hg17|chr5 (37330183-37330368) | |
| 753-903, gnl|Hg17|chr5 (37330338-37330187) | |
| 753-903, gnl|loxAfr1|scaffold_32878 (18997-18816) | |
| 753-903, gnl|mm7|chr15 (7981872-7981711) | |
| 753-903, gnl|Mm7|chr15 (7981717-7981866) | |
| 753-903, gnl|monDom2|scaffold_20 (34875345-34875184) | |
| 753-903, gnl|panTro1|chr4 (79427942-79427757) | |
| 753-903, gnl|rheMac2|chr6 (37132807-37132993) | |
| 753-903, gnl|rn3|chr2 (57688659-57688504) | |
| 753-903, gnl|tetNig1|chr4 (2171471-2171616) | |
| 753-903, gnl|xenTro1|scaffold_363 (899649-899490) | |
| 1008-1200, gnl|bosTau2|chr20 (24986250-24986443) | |
| 1008-1200, gnl|Hg17|chr5 (37327899-37327709) | |
| 1008-1200, gnl|Mm7|chr15 (7984437-7984629) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hea (0.408998) | |
| gul (0.355177) | |
| cte (0.29274) | |
| sug (0.254582) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| fco (0.157208) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| gul (0.355177) | |
| cte (0.29274) | |
| sug (0.254582) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| fco (0.157208) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| bla (0.124347) | |
| tra (0.123092) |