Non-Coding RNA Search

Ss1.1-rgul0118_a12.5

Sequence:


               
               TTAAGTTGACATCAGTGGTTAAAAGCAGAAAACTGTTTCAGGACAAGTGAGGAGGGGTGT
TGTAACAATATTGGGCAATTTAAAAGATGGAGGGTGGTGTGTGATAAGTGATGAAAGAAA
AGAATGACTGGAGAAGAGGAGAACAAACTTGTTTTGAAGTCGTATGATGCTTGGCCAGTG
GACGCCATAGCCTTACTTATTTGAGCTGGGCTTAAACAGATGAGACCTAGAAGAAAATGG
CTGAATATACAAGCAAGGGGGTGGGGACTAGTTTTTAAGTTGGGAAGTACGATAGTGAAA
TGTCACAGATAGAGAAAGTTGCTCTTAAAAAATGGCTTGGATTGCTTTCCTCTTGTTGAA
AATGTACCATGCATTTCTCAGCTTGGGGTACTATAGTTTGTGGAAAGTGGACCTGCCTCT
GAATTGCATATTGTAGGAAAGAATGCTTAATCCTACCCACTTCTTATATAATGTCCACAA
GGTTGCAGGATCATAATCTCTTGTGCCACATTTATTTCTAGAGTTGCAGCAGATATTCTC
ACATTTTTATATAAACAAATATTCCCGGTAAGTAGTAACTGCAACCAACCAGTATTATGT
AGTGCTCTGCCTGGTTGTATGGGCAGTTGTATCATTTTCAGAGCTTTCAGGAAATACTCT
CCTAATTGGCTATGTTTGAGATCTCTGTTCTCTCAGAAGATGAGGAAGGAAGCTAGGACT
CTGAATTTTTTGGGTGCTGCTTCTCTTGATTGTTGAGCTGGGAAACTGACTATCTCCAAC
CTCTTACCCACCTCAGTGGCACATCCCAGGAATCACCATGATAGGAAGAGCCTGGTTGGC
TGTCCTGTCCTTCATTGGCCGTTTTCTTTAAAGCTGAGTCCCCAAAGATGCAAATGAAAG
CTGAAGGTTTTAGGAAAGTAGAAGTGAAAAGGGCAGGCATCCCAAGCTTTGCTTTGAAAC
CGTTTACTTTTTCTCTGTTTATAATCTTCGGGGAGATGGTAAGAGTAAGGACAGAAGTGC
CAGGGAAGTGGGAGACTTGACACCTGAGACAAAGGGGACAGTACTTTGTACCGGAGGAAC
AAGGGAGCCAAATGCAGCACAGGATGTTTTGTTACTTTGGTTTAATCATTCTGAGATCTC
TTCACTCACACATGGAAAGTGAGAACTGGTTTTATTTACTGTTGATTTTTTTTTTTCCCC
TCCTGTGGATGAAATAACTGAAGCCTAGAGGAATGAACTAGTGCTACTGAACTGTTTAAA
TTATTTTTGTGTTAATAGTACACTGAGTATCTTTTTTCACATTAAAAAGTCTTTCTGAAT
TATAAATGTTTTCCTTACATTATTTAACAATGTACACTGTTTAAAAAATAAATAAACTGA
ATTCAAACCTTGGGGATTCTCGGCAGCCATCACTCGTGCGTTCGGCACCAACCCCAGGGT
CGCACTTCTTGCTCCCTTTTGTTGCCTTTGTAGATGGACTTAACGAAGCCATTCAAATAA
ACCATACTTGCTTTTGTTGAGCTATGGGGTTTCATTTTCAGCAAATGCCTTTTTCATGAT
TTCATTAGCTCTGATTTGACTTGTGTACAGTTTATAACTGGATTTAAGCAGCAGCTCTGA
CCTGAAGCAAGATACTGCAGACAAGGAAGATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGTTGACATCAGTGGTTAAAAGCAGAAAACTGTTTCAGGACAAGTGAGGAGGGGTGT
TGTAACAATATTGGGCAATTTAAAAGATGGAGGGTGGTGTGTGATAAGTGATGAAAGAAA
AGAATGACTGGAGAAGAGGAGAACAAACTTGTTTTGAAGTCGTATGATGCTTGGCCAGTG
GACGCCATAGCCTTACTTATTTGAGCTGGGCTTAAACAGATGAGACCTAGAAGAAAATGG
CTGAATATACAAGCAAGGGGGTGGGGACTAGTTTTTAAGTTGGGAAGTACGATAGTGAAA
TGTCACAGATAGAGAAAGTTGCTCTTAAAAAATGGCTTGGATTGCTTTCCTCTTGTTGAA
AATGTACCATGCATTTCTCAGCTTGGGGTACTATAGTTTGTGGAAAGTGGACCTGCCTCT
GAATTGCATATTGTAGGAAAGAATGCTTAATCCTACCCACTTCTTATATAATGTCCACAA
GGTTGCAGGATCATAATCTCTTGTGCCACATTTATTTCTAGAGTTGCAGCAGATATTCTC
ACATTTTTATATAAACAAATATTCCCGGTAAGTAGTAACTGCAACCAACCAGTATTATGT
AGTGCTCTGCCTGGTTGTATGGGCAGTTGTATCATTTTCAGAGCTTTCAGGAAATACTCT
CCTAATTGGCTATGTTTGAGATCTCTGTTCTCTCAGAAGATGAGGAAGGAAGCTAGGACT
CTGAATTTTTTGGGTGCTGCTTCTCTTGATTGTTGAGCTGGGAAACTGACTATCTCCAAC
CTCTTACCCACCTCAGTGGCACATCCCAGGAATCACCATGATAGGAAGAGCCTGGTTGGC
TGTCCTGTCCTTCATTGGCCGTTTTCTTTAAAGCTGAGTCCCCAAAGATGCAAATGAAAG
CTGAAGGTTTTAGGAAAGTAGAAGTGAAAAGGGCAGGCATCCCAAGCTTTGCTTTGAAAC
CGTTTACTTTTTCTCTGTTTATAATCTTCGGGGAGATGGTAAGAGTAAGGACAGAAGTGC
CAGGGAAGTGGGAGACTTGACACCTGAGACAAAGGGGACAGTACTTTGTACCGGAGGAAC
AAGGGAGCCAAATGCAGCACAGGATGTTTTGTTACTTTGGTTTAATCATTCTGAGATCTC
TTCACTCACACATGGAAAGTGAGAACTGGTTTTATTTACTGTTGATTTTTTTTTTTCCCC
TCCTGTGGATGAAATAACTGAAGCCTAGAGGAATGAACTAGTGCTACTGAACTGTTTAAA
TTATTTTTGTGTTAATAGTACACTGAGTATCTTTTTTCACATTAAAAAGTCTTTCTGAAT
TATAAATGTTTTCCTTACATTATTTAACAATGTACACTGTTTAAAAAATAAATAAACTGA
ATTCAAACCTTGGGGATTCTCGGCAGCCATCACTCGTGCGTTCGGCACCAACCCCAGGGT
CGCACTTCTTGCTCCCTTTTGTTGCCTTTGTAGATGGACTTAACGAAGCCATTCAAATAA
ACCATACTTGCTTTTGTTGAGCTATGGGGTTTCATTTTCAGCAAATGCCTTTTTCATGAT
TTCATTAGCTCTGATTTGACTTGTGTACAGTTTATAACTGGATTTAAGCAGCAGCTCTGA
CCTGAAGCAAGATACTGCAGACAAGGAAGATATTTT

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-749, gnl|bosTau2|chr5 (65123484-65124204)
               

               
               1-749, gnl|Hg17|chr12 (889324-890064)
               

               
               1-749, gnl|Mm7|chr6 (119950566-119949978)
               


               
               783-1418, gnl|bosTau2|chr5 (65124207-65124827)
               

               
               783-1418, gnl|Hg17|chr12 (890092-890761)
               

               
               783-1418, gnl|Mm7|chr6 (119949975-119949391)
               


               
               1483-1604, gnl|bosTau2|chr5 (65124867-65124985)
               

               
               1483-1604, gnl|Hg17|chr12 (890842-890960)
               

               
               1483-1604, gnl|Mm7|chr6 (119949308-119949199)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-749, gnl|bosTau2|chr5 (65123484-65124204)
               

               
               1-749, gnl|Hg17|chr12 (889324-890064)
               

               
               1-749, gnl|Mm7|chr6 (119950566-119949978)
               


               
               783-1418, gnl|bosTau2|chr5 (65124207-65124827)
               

               
               783-1418, gnl|Hg17|chr12 (890092-890761)
               

               
               783-1418, gnl|Mm7|chr6 (119949975-119949391)
               


               
               1483-1604, gnl|bosTau2|chr5 (65124867-65124985)
               

               
               1483-1604, gnl|Hg17|chr12 (890842-890960)
               

               
               1483-1604, gnl|Mm7|chr6 (119949308-119949199)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               cte (1.17096)
               

               
               csk (0.70373)
               

               
               spc (0.680195)
               

               
               fce (0.543183)
               

               
               cbe (0.478469)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               sto (0.359648)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               csk (0.70373)
               

               
               spc (0.680195)
               

               
               fce (0.543183)
               

               
               cbe (0.478469)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               sto (0.359648)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	1-749, gnl\|bosTau2\|chr5 (65123484-65124204)
	1-749, gnl\|Hg17\|chr12 (889324-890064)
	1-749, gnl\|Mm7\|chr6 (119950566-119949978)

	783-1418, gnl\|bosTau2\|chr5 (65124207-65124827)
	783-1418, gnl\|Hg17\|chr12 (890092-890761)
	783-1418, gnl\|Mm7\|chr6 (119949975-119949391)

	1483-1604, gnl\|bosTau2\|chr5 (65124867-65124985)
	1483-1604, gnl\|Hg17\|chr12 (890842-890960)
	1483-1604, gnl\|Mm7\|chr6 (119949308-119949199)

	cte (1.17096)
	csk (0.70373)
	spc (0.680195)
	fce (0.543183)
	cbe (0.478469)
	spl (0.429553)
	tes (0.415628)
	sto (0.359648)
	tbr (0.308356)
	liv (0.292569)
	hyp (0.285673)
	ste (0.270416)
	ova (0.258264)
	ese (0.253004)
	fli (0.202881)
	aor (0.195274)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	nje (0.16592)
	cag (0.151194)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	lnt (0.142308)
	ssp (0.13552)
	lyg (0.133103)
	cov (0.132153)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)