Ss1.1-rgul0118_d18.5
|
GGCCAATGATCAAACCTGAGCCACAGCAGCAACCCCAGGCCACTGCAGTGACAACATCAG
ATCTTTAACCCACTGCACCACCAGGGAACTCTTCTTCTTCATCTTTTTTTGTTTTTACGT
TTCATTTCCTGTCTTTGATGTTAGCTTCCCAGGGGCACCAAGGTGCTTGGAATCAGTGCC
AGAGCCATGACACCTGGGATCCCTGTGCCGGCAGATTGAGTTCTGATCCTAAGGTCAAAT
CTTTATGATGAGAAATTTCCAAAATTAAAAAAAAAAAAATCACACAACATGTACACACAC
ACACACACACCACAAGCCTTTTTAAAAAATACTCAGCGTTTGTTGTGCTTTGTTTGTTGT
GCTTTGTTTGTTGAAGGATCATAGTGACCCCTTGGGTGAAATCATTTCACAGTTGCCATG
TTGGTTTTTAAAACTGGCAAACAGAGAAAGTTTTACAGGTCAAAACTGGAAATACTCTCT
TGAGCTTTAAGATAAAGTGCTTATGTTTGTATCACCACGTGCATGAATATGTAAGAATCA
GATGTAATTTCTGCTTCATCAGTTTTACATGTTTGTGTTGTCACTGAAAAGTGCACCTGT
TGTTTATAACTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCCAATGATCAAACCTGAGCCACAGCAGCAACCCCAGGCCACTGCAGTGACAACATCAG
ATCTTTAACCCACTGCACCACCAGGGAACTCTTCTTCTTCATCTTTTTTTGTTTTTACGT
TTCATTTCCTGTCTTTGATGTTAGCTTCCCAGGGGCACCAAGGTGCTTGGAATCAGTGCC
AGAGCCATGACACCTGGGATCCCTGTGCCGGCAGATTGAGTTCTGATCCTAAGGTCAAAT
CTTTATGATGAGAAATTTCCAAAATTAAAAAAAAAAAAATCACACAACATGTACACACAC
ACACACACACCACAAGCCTTTTTAAAAAATACTCAGCGTTTGTTGTGCTTTGTTTGTTGT
GCTTTGTTTGTTGAAGGATCATAGTGACCCCTTGGGTGAAATCATTTCACAGTTGCCATG
TTGGTTTTTAAAACTGGCAAACAGAGAAAGTTTTACAGGTCAAAACTGGAAATACTCTCT
TGAGCTTTAAGATAAAGTGCTTATGTTTGTATCACCACGTGCATGAATATGTAAGAATCA
GATGTAATTTCTGCTTCATCAGTTTTACATGTTTGTGTTGTCACTGAAAAGTGCACCTGT
TGTTTATAACTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
527-602, + strand, RNAmicro p=0.971908 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
527-602, + strand, RNAmicro p=0.971908 |
|
92-430, gnl|bosTau2|chr22 (21046755-21047081) |
|
92-430, gnl|canFam2|chr20 (22187405-22187043) |
|
92-430, gnl|dasNov1|scaffold_25996 (1730-1389) |
|
92-430, gnl|echTel1|scaffold_301037 (6753-6373) |
|
92-430, gnl|hg17|chr3 (73111827-73112187) |
|
92-430, gnl|Hg17|chr3 (73111857-73112188) |
|
92-430, gnl|loxAfr1|scaffold_5066 (30256-29877) |
|
92-430, gnl|mm7|chr6 (100900171-100900494) |
|
92-430, gnl|Mm7|chr6 (100900195-100900496) |
|
92-430, gnl|oryCun1|scaffold_180146 (808-513) |
|
92-430, gnl|panTro1|chr2 (75082410-75082766) |
|
92-430, gnl|rheMac2|chr2 (63241567-63241210) |
|
92-430, gnl|rn3|chr4 (135946195-135946531) |
| |
|
434-612, gnl|bosTau2|chr22 (21047168-21047348) |
|
434-612, gnl|Hg17|chr3 (73112208-73112399) |
|
434-612, gnl|Mm7|chr6 (100900540-100900713) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
92-430, gnl|bosTau2|chr22 (21046755-21047081) |
|
92-430, gnl|canFam2|chr20 (22187405-22187043) |
|
92-430, gnl|dasNov1|scaffold_25996 (1730-1389) |
|
92-430, gnl|echTel1|scaffold_301037 (6753-6373) |
|
92-430, gnl|hg17|chr3 (73111827-73112187) |
|
92-430, gnl|Hg17|chr3 (73111857-73112188) |
|
92-430, gnl|loxAfr1|scaffold_5066 (30256-29877) |
|
92-430, gnl|mm7|chr6 (100900171-100900494) |
|
92-430, gnl|Mm7|chr6 (100900195-100900496) |
|
92-430, gnl|oryCun1|scaffold_180146 (808-513) |
|
92-430, gnl|panTro1|chr2 (75082410-75082766) |
|
92-430, gnl|rheMac2|chr2 (63241567-63241210) |
|
92-430, gnl|rn3|chr4 (135946195-135946531) |
| |
|
434-612, gnl|bosTau2|chr22 (21047168-21047348) |
|
434-612, gnl|Hg17|chr3 (73112208-73112399) |
|
434-612, gnl|Mm7|chr6 (100900540-100900713) |
|
gul (0.532765) |
|
sme (0.305437) |
|
hea (0.204499) |
|
bla (0.124347) |
|
jca (0.11396) |
|
gul (0.532765) |
|
sme (0.305437) |
|
hea (0.204499) |
|
bla (0.124347) |
|
jca (0.11396) |
