Non-Coding RNA Search

Ss1.1-rgul0118_i18.5

Sequence:


               
               GCTAGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTCAGAGGGGTGCCA
GGCACAGATCCTGGCATTCACTATTTATCAGAGAGGCAGCCCAAACCCATGTTAACTCTA
GAAACAGCCTGACTGGCTTCCTTGCGTTCACTTGGTACTCCCTTCAAACAGCTGCTCAAA
ATACAAGCTGGTTAGGTTATCCCTGCCTGAACGTCTTCATGAGAGCTCCAGGGCTCTTGG
GGCATGGTCAAAACTGTCAAATACCTTAAAACCTTTGCTGGCCTGTCTGTCTCTTCAGCC
TCATTTTGAACTGTGCTCCCTGTGCCCTGTGCTCCAGTCACCCTGGCCTCTAGATCTGCC
TATGAGCCACACTTCTTCCTACCACGGGGACTTTGAGCATCTGGAATGCTCTTCCTCCCC
CACTCACCTGTTAACTCCTGCTCATCCTTCACATACCTCCCCCCACCTCTTTCATAGCAC
GGATCACAGATCACAGATACCTGCAGAAGGCCTACAGGATGCCAGGCCCCTCTTATTAAT
GTGTTATTTTTTAATGGGATTATTTGATTATTCTCTGCCTCCTCCACCAGACTGTAAGTT
TCTTGAAATCAGGAATCCTGTGTTTATGGTCAACATTGGTTCCCTTGGCACACAGCAGGC
CCTCAATAAATGTTCCCCCAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTCAGAGGGGTGCCA
GGCACAGATCCTGGCATTCACTATTTATCAGAGAGGCAGCCCAAACCCATGTTAACTCTA
GAAACAGCCTGACTGGCTTCCTTGCGTTCACTTGGTACTCCCTTCAAACAGCTGCTCAAA
ATACAAGCTGGTTAGGTTATCCCTGCCTGAACGTCTTCATGAGAGCTCCAGGGCTCTTGG
GGCATGGTCAAAACTGTCAAATACCTTAAAACCTTTGCTGGCCTGTCTGTCTCTTCAGCC
TCATTTTGAACTGTGCTCCCTGTGCCCTGTGCTCCAGTCACCCTGGCCTCTAGATCTGCC
TATGAGCCACACTTCTTCCTACCACGGGGACTTTGAGCATCTGGAATGCTCTTCCTCCCC
CACTCACCTGTTAACTCCTGCTCATCCTTCACATACCTCCCCCCACCTCTTTCATAGCAC
GGATCACAGATCACAGATACCTGCAGAAGGCCTACAGGATGCCAGGCCCCTCTTATTAAT
GTGTTATTTTTTAATGGGATTATTTGATTATTCTCTGCCTCCTCCACCAGACTGTAAGTT
TCTTGAAATCAGGAATCCTGTGTTTATGGTCAACATTGGTTCCCTTGGCACACAGCAGGC
CCTCAATAAATGTTCCCCCAAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-436, - strand, RNAz p=0.908759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-436, - strand, RNAz p=0.908759

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               15-684, gnl|bosTau2|chr3 (9939249-9939931)
               

               
               15-684, gnl|canFam2|chr7 (44080488-44080046)
               

               
               15-684, gnl|echTel1|scaffold_308694 (71656-72087)
               

               
               15-684, gnl|hg17|chr1 (153697955-153698415)
               

               
               15-684, gnl|Hg17|chr1 (153698003-153698708)
               

               
               15-684, gnl|loxAfr1|scaffold_35096 (451-922)
               

               
               15-684, gnl|mm7|chr3 (87863696-87863328)
               

               
               15-684, gnl|Mm7|chr3 (87863657-87862902)
               

               
               15-684, gnl|oryCun1|scaffold_199691 (188676-189051)
               

               
               15-684, gnl|panTro1|chr1_random (25928632-25928172)
               

               
               15-684, gnl|rheMac2|chr1 (135526264-135526721)
               

               
               15-684, gnl|rn3|chr2 (179760382-179759995)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-684, gnl|bosTau2|chr3 (9939249-9939931)
               

               
               15-684, gnl|canFam2|chr7 (44080488-44080046)
               

               
               15-684, gnl|echTel1|scaffold_308694 (71656-72087)
               

               
               15-684, gnl|hg17|chr1 (153697955-153698415)
               

               
               15-684, gnl|Hg17|chr1 (153698003-153698708)
               

               
               15-684, gnl|loxAfr1|scaffold_35096 (451-922)
               

               
               15-684, gnl|mm7|chr3 (87863696-87863328)
               

               
               15-684, gnl|Mm7|chr3 (87863657-87862902)
               

               
               15-684, gnl|oryCun1|scaffold_199691 (188676-189051)
               

               
               15-684, gnl|panTro1|chr1_random (25928632-25928172)
               

               
               15-684, gnl|rheMac2|chr1 (135526264-135526721)
               

               
               15-684, gnl|rn3|chr2 (179760382-179759995)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               cly (0.120642)

	15-684, gnl\|bosTau2\|chr3 (9939249-9939931)
	15-684, gnl\|canFam2\|chr7 (44080488-44080046)
	15-684, gnl\|echTel1\|scaffold_308694 (71656-72087)
	15-684, gnl\|hg17\|chr1 (153697955-153698415)
	15-684, gnl\|Hg17\|chr1 (153698003-153698708)
	15-684, gnl\|loxAfr1\|scaffold_35096 (451-922)
	15-684, gnl\|mm7\|chr3 (87863696-87863328)
	15-684, gnl\|Mm7\|chr3 (87863657-87862902)
	15-684, gnl\|oryCun1\|scaffold_199691 (188676-189051)
	15-684, gnl\|panTro1\|chr1_random (25928632-25928172)
	15-684, gnl\|rheMac2\|chr1 (135526264-135526721)
	15-684, gnl\|rn3\|chr2 (179760382-179759995)

	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	lnt (0.142308)
	ste (0.135208)
	cly (0.120642)