Ss1.1-rgul0118_k4.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AGATGGCGGCGGGAGAGGCTGGTGTGACCCTAGGACAGCCTCATCTTTCTCGCCAGGATC TCACTACCTTGGATGTTACCAGGTTGACGCCACTCTCACATGAAGTTATTAGCAGACAAG CCACAATTAATATAGGTACAATTGGTCATGTTGCCCATGGGAAATCTACTGTTGTAAAAG CTATATCTGGAGTTCATACTGTTAGATTCAAAAATGAACTAGAAAGAAATATTACAATCA AGCTTGGATATGCTAATGCTAAGATTTACAAACTTGATGATGCAAGTTGTCCTCGGCCAG AATGCTATAGATCTTGTGGAAGTAGTACACCTGATGAGTTTCCTACAGACATTCCAGGAA CCAAAGGGAACTTCAAACTAGTCAGACATGTTTCCTTTGTTGACTGTCCTGGTCATGATA TTTTGATGGCTACTATGCTGAATGGTGCAGCAGTGATGGATGCAGCTCTTCTGTTAATAG CTGGTAATGAATCCTGTCCTCAACCTCAGACTTCTGAACACTTGGCTGCCATAGAAATTA TGAAGCTGAAACACATATTGATTCTACAAAATAAAATTGATTTGGTAAAAGAAAGTCAGG CTAAAGAACAGTATGAACAGATTCTTGCATTTGTACAAGGTACAGTAGCAGAAGGCGCGC CTATTATTCCAATTTCTGCTCAGTTGAAATATAATATTGAAGTTGTCTGTGAGTATATTG TAAAGAAAATTCCAGTACCTCTAAGAGACTTTACTTCAGAACCTCGACTTATTGTTATTA GGTCCTTTGATGTCAACAAACCTGGCTGTGAGGTTGATGATCTTAAAGGTGGTGTGGCCG GTGGTAGTATTTTAAAAGGAGTATTAAAGGTGGGCCAGGAGATAGAAGTCAGACCTGGTA TCGTTTCCAAAGATTGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCAAAAATTGTCT CACTTTTTGCGGAACACAATGATCTTCAGTATGCTGCTCCAGGGGGTCTTATTGGAGTTG GAACAAAAATTGACCCCACTTTGTGCCGGGCTGACAGAATGGTGGGACAGGTGCTTGGTG CAGTTGGAGCTTTACCAGAGATCTTCACAGAATTGGAAATTTCCTATTTCCTACTTAGAC GGCTTCTTGGTGTACGTACTGAAGGAGACAAAAAAGCAGCAAAGGTGCAGAAGCTGTCTA AGAATGAAGTGCTTATGGTGAACATAGGATCCCTCTCAACAGGTGGAAGAGTTAGTGCAG TCAAGGCTGATTTGGGCAAAATAGTTCTCACTAATCCTGTGTGCACAGAAGTGGGAGAAA AAATAGCCCTAAGCCGAAGAGTTGAGAAACATTGGCGTTTAATTGGTTGGGGTCAGATAA GAAGAGGAGTAACCATCAAGCCAACAGTAGATGATGACTGAAGATTATCAGTTACATAAT ACAGTTGGATAAAGTCAGAATTTTTCTTTAACAACCTGGGGATATAATGTCAGAGTAATA CTGGAGAAGCTGTTGTTAGAAGCTGTAAAGTTATTTTCATTTTCTTCTGATGAAAATTAG CCTCTATTATTAAAGTAATTAATAGGTCTATAATAAATGTCAGGATTGGTATATTGATGG ATTTAATCCACATTTTAGCAGAAATTGATCATTGATTGGTAAACAGTTTCACATTTATGC CTTAATTCAGATTTGAAATGTGACTGCTGTTACAACTAAGTTTTGCTATATAGCATACAT AACCATTGAACATGTTTGAAATAAAATTTTTCTCTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AGATGGCGGCGGGAGAGGCTGGTGTGACCCTAGGACAGCCTCATCTTTCTCGCCAGGATC TCACTACCTTGGATGTTACCAGGTTGACGCCACTCTCACATGAAGTTATTAGCAGACAAG CCACAATTAATATAGGTACAATTGGTCATGTTGCCCATGGGAAATCTACTGTTGTAAAAG CTATATCTGGAGTTCATACTGTTAGATTCAAAAATGAACTAGAAAGAAATATTACAATCA AGCTTGGATATGCTAATGCTAAGATTTACAAACTTGATGATGCAAGTTGTCCTCGGCCAG AATGCTATAGATCTTGTGGAAGTAGTACACCTGATGAGTTTCCTACAGACATTCCAGGAA CCAAAGGGAACTTCAAACTAGTCAGACATGTTTCCTTTGTTGACTGTCCTGGTCATGATA TTTTGATGGCTACTATGCTGAATGGTGCAGCAGTGATGGATGCAGCTCTTCTGTTAATAG CTGGTAATGAATCCTGTCCTCAACCTCAGACTTCTGAACACTTGGCTGCCATAGAAATTA TGAAGCTGAAACACATATTGATTCTACAAAATAAAATTGATTTGGTAAAAGAAAGTCAGG CTAAAGAACAGTATGAACAGATTCTTGCATTTGTACAAGGTACAGTAGCAGAAGGCGCGC CTATTATTCCAATTTCTGCTCAGTTGAAATATAATATTGAAGTTGTCTGTGAGTATATTG TAAAGAAAATTCCAGTACCTCTAAGAGACTTTACTTCAGAACCTCGACTTATTGTTATTA GGTCCTTTGATGTCAACAAACCTGGCTGTGAGGTTGATGATCTTAAAGGTGGTGTGGCCG GTGGTAGTATTTTAAAAGGAGTATTAAAGGTGGGCCAGGAGATAGAAGTCAGACCTGGTA TCGTTTCCAAAGATTGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCAAAAATTGTCT CACTTTTTGCGGAACACAATGATCTTCAGTATGCTGCTCCAGGGGGTCTTATTGGAGTTG GAACAAAAATTGACCCCACTTTGTGCCGGGCTGACAGAATGGTGGGACAGGTGCTTGGTG CAGTTGGAGCTTTACCAGAGATCTTCACAGAATTGGAAATTTCCTATTTCCTACTTAGAC GGCTTCTTGGTGTACGTACTGAAGGAGACAAAAAAGCAGCAAAGGTGCAGAAGCTGTCTA AGAATGAAGTGCTTATGGTGAACATAGGATCCCTCTCAACAGGTGGAAGAGTTAGTGCAG TCAAGGCTGATTTGGGCAAAATAGTTCTCACTAATCCTGTGTGCACAGAAGTGGGAGAAA AAATAGCCCTAAGCCGAAGAGTTGAGAAACATTGGCGTTTAATTGGTTGGGGTCAGATAA GAAGAGGAGTAACCATCAAGCCAACAGTAGATGATGACTGAAGATTATCAGTTACATAAT ACAGTTGGATAAAGTCAGAATTTTTCTTTAACAACCTGGGGATATAATGTCAGAGTAATA CTGGAGAAGCTGTTGTTAGAAGCTGTAAAGTTATTTTCATTTTCTTCTGATGAAAATTAG CCTCTATTATTAAAGTAATTAATAGGTCTATAATAAATGTCAGGATTGGTATATTGATGG ATTTAATCCACATTTTAGCAGAAATTGATCATTGATTGGTAAACAGTTTCACATTTATGC CTTAATTCAGATTTGAAATGTGACTGCTGTTACAACTAAGTTTTGCTATATAGCATACAT AACCATTGAACATGTTTGAAATAAAATTTTTCTCTT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 95 entry(ies) | More info |
Aligned organism(s): 95 entry(ies) | Help | Less info |
262-428, gnl|bosTau2|chrX (37982846-37982684) | |
262-428, gnl|canFam2|chrX (19617908-19618029) | |
262-428, gnl|canFam2|chrX (19617899-19618035) | |
262-428, gnl|danRer3|chr24 (10849885-10849764) | |
262-428, gnl|danRer3|chr24 (10849888-10849760) | |
262-428, gnl|dasNov1|scaffold_1 (308005-307888) | |
262-428, gnl|dasNov1|scaffold_164414 (1291-1427) | |
262-428, gnl|echTel1|scaffold_281329 (27450-27571) | |
262-428, gnl|echTel1|scaffold_281329 (27452-27574) | |
262-428, gnl|fr1|chrUn (157269555-157269434) | |
262-428, gnl|fr1|chrUn (157269564-157269428) | |
262-428, gnl|galGal2|chr1 (111593391-111593270) | |
262-428, gnl|galGal2|chr1 (111593389-111593264) | |
262-428, gnl|hg17|chr12 (10550029-10550150) | |
262-428, gnl|hg17|chrX (23835397-23835533) | |
262-428, gnl|Hg17|chrX (23835405-23835575) | |
262-428, gnl|loxAfr1|scaffold_1497 (7715-7583) | |
262-428, gnl|loxAfr1|scaffold_48447 (641-762) | |
262-428, gnl|mm7|chrUn_random (2774027-2773906) | |
262-428, gnl|mm7|chrX (89596111-89595978) | |
262-428, gnl|Mm7|chrX (89596104-89595959) | |
262-428, gnl|monDom2|scaffold_48 (7867479-7867343) | |
262-428, gnl|monDom2|scaffold_66 (3913488-3913367) | |
262-428, gnl|oryCun1|scaffold_97480 (10323-10444) | |
262-428, gnl|oryCun1|scaffold_97480 (10314-10450) | |
262-428, gnl|panTro1|chrUn_random (36824038-36824159) | |
262-428, gnl|panTro1|chrX (24669433-24669569) | |
262-428, gnl|rheMac2|chr4 (69781622-69781501) | |
262-428, gnl|rheMac2|chrX (21872211-21872347) | |
262-428, gnl|rn3|chrX (81636582-81636461) | |
262-428, gnl|rn3|chrX (81636588-81636455) | |
262-428, gnl|tetNig1|chrUn_random (52956945-52957066) | |
262-428, gnl|tetNig1|chrUn_random (52956942-52957072) | |
262-428, gnl|xenTro1|scaffold_100 (799283-799403) | |
262-428, gnl|xenTro1|scaffold_100 (799273-799409) | |
478-649, gnl|bosTau2|chrX (37979130-37978960) | |
478-649, gnl|canFam2|chrX (19621310-19621503) | |
478-649, gnl|danRer3|chr24 (10846970-10846780) | |
478-649, gnl|dasNov1|scaffold_164414 (4465-4667) | |
478-649, gnl|echTel1|scaffold_169610 (3187-3398) | |
478-649, gnl|fr1|chrUn (157269189-157269006) | |
478-649, gnl|galGal2|chr1 (111591413-111591218) | |
478-649, gnl|hg17|chrX (23840150-23840355) | |
478-649, gnl|Hg17|chrX (23840187-23840357) | |
478-649, gnl|loxAfr1|scaffold_1497 (5016-4812) | |
478-649, gnl|mm7|chrX (89590800-89590597) | |
478-649, gnl|Mm7|chrX (89590763-89590593) | |
478-649, gnl|monDom2|scaffold_48 (7865214-7865015) | |
478-649, gnl|oryCun1|scaffold_97480 (13506-13707) | |
478-649, gnl|panTro1|chrX (24674185-24674390) | |
478-649, gnl|rheMac2|chrX (21877645-21877851) | |
478-649, gnl|rn3|chrX (81631439-81631236) | |
478-649, gnl|tetNig1|chrUn_random (52957303-52957495) | |
478-649, gnl|xenTro1|scaffold_100 (802540-802734) | |
768-871, gnl|bosTau2|chrX (37976301-37976198) | |
768-871, gnl|canFam2|chrX (19625113-19625206) | |
768-871, gnl|canFam2|chrX (19625108-19625226) | |
768-871, gnl|danRer3|chr24 (10842822-10842729) | |
768-871, gnl|danRer3|chr24 (10842827-10842721) | |
768-871, gnl|dasNov1|scaffold_49073 (3420-3513) | |
768-871, gnl|dasNov1|scaffold_49073 (3420-3513) | |
768-871, gnl|echTel1|scaffold_169610 (6197-6306) | |
768-871, gnl|echTel1|scaffold_281329 (27962-28055) | |
768-871, gnl|fr1|chrUn (157268496-157268403) | |
768-871, gnl|fr1|chrUn (157268501-157268394) | |
768-871, gnl|galGal2|chr1 (111589841-111589760) | |
768-871, gnl|galGal2|chr1 (111589000-111588874) | |
768-871, gnl|hg17|chr12 (10550541-10550634) | |
768-871, gnl|hg17|chrX (23843767-23843885) | |
768-871, gnl|Hg17|chrX (23843766-23843868) | |
768-871, gnl|loxAfr1|scaffold_1497 (1343-1225) | |
768-871, gnl|loxAfr1|scaffold_48447 (1149-1226) | |
768-871, gnl|mm7|chrUn_random (2773515-2773422) | |
768-871, gnl|mm7|chrX (89587643-89587525) | |
768-871, gnl|Mm7|chrX (89587643-89587540) | |
768-871, gnl|monDom2|scaffold_48 (7863055-7862951) | |
768-871, gnl|monDom2|scaffold_66 (3912978-3912885) | |
768-871, gnl|oryCun1|scaffold_81796 (4515-4604) | |
768-871, gnl|oryCun1|scaffold_81796 (4506-4623) | |
768-871, gnl|panTro1|chrUn_random (36824550-36824643) | |
768-871, gnl|panTro1|chrUn_random (36824550-36824643) | |
768-871, gnl|rheMac2|chr4 (69781110-69781017) | |
768-871, gnl|rheMac2|chrX (21881300-21881418) | |
768-871, gnl|rn3|chrX (81627343-81627254) | |
768-871, gnl|rn3|chrX (81627352-81627234) | |
768-871, gnl|tetNig1|chrUn_random (52957845-52957938) | |
768-871, gnl|tetNig1|chrUn_random (52957840-52957958) | |
768-871, gnl|xenTro1|scaffold_100 (804265-804353) | |
768-871, gnl|xenTro1|scaffold_100 (804257-804360) | |
976-1776, gnl|bosTau2|chr28 (12225648-12224870) | |
976-1776, gnl|Hg17|chr12 (10550742-10551848) | |
976-1776, gnl|Mm7|chrUn_random (2773312-2771559) | |
1372-1493, gnl|bosTau2|chr25 (33379383-33379267) | |
1372-1493, gnl|Hg17|chr4 (114075851-114075706) | |
1372-1493, gnl|Mm7|chr7 (56834073-56833925) |
Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
262-428, gnl|bosTau2|chrX (37982846-37982684) | |
262-428, gnl|canFam2|chrX (19617908-19618029) | |
262-428, gnl|canFam2|chrX (19617899-19618035) | |
262-428, gnl|danRer3|chr24 (10849885-10849764) | |
262-428, gnl|danRer3|chr24 (10849888-10849760) | |
262-428, gnl|dasNov1|scaffold_1 (308005-307888) | |
262-428, gnl|dasNov1|scaffold_164414 (1291-1427) | |
262-428, gnl|echTel1|scaffold_281329 (27450-27571) | |
262-428, gnl|echTel1|scaffold_281329 (27452-27574) | |
262-428, gnl|fr1|chrUn (157269555-157269434) | |
262-428, gnl|fr1|chrUn (157269564-157269428) | |
262-428, gnl|galGal2|chr1 (111593391-111593270) | |
262-428, gnl|galGal2|chr1 (111593389-111593264) | |
262-428, gnl|hg17|chr12 (10550029-10550150) | |
262-428, gnl|hg17|chrX (23835397-23835533) | |
262-428, gnl|Hg17|chrX (23835405-23835575) | |
262-428, gnl|loxAfr1|scaffold_1497 (7715-7583) | |
262-428, gnl|loxAfr1|scaffold_48447 (641-762) | |
262-428, gnl|mm7|chrUn_random (2774027-2773906) | |
262-428, gnl|mm7|chrX (89596111-89595978) | |
262-428, gnl|Mm7|chrX (89596104-89595959) | |
262-428, gnl|monDom2|scaffold_48 (7867479-7867343) | |
262-428, gnl|monDom2|scaffold_66 (3913488-3913367) | |
262-428, gnl|oryCun1|scaffold_97480 (10323-10444) | |
262-428, gnl|oryCun1|scaffold_97480 (10314-10450) | |
262-428, gnl|panTro1|chrUn_random (36824038-36824159) | |
262-428, gnl|panTro1|chrX (24669433-24669569) | |
262-428, gnl|rheMac2|chr4 (69781622-69781501) | |
262-428, gnl|rheMac2|chrX (21872211-21872347) | |
262-428, gnl|rn3|chrX (81636582-81636461) | |
262-428, gnl|rn3|chrX (81636588-81636455) | |
262-428, gnl|tetNig1|chrUn_random (52956945-52957066) | |
262-428, gnl|tetNig1|chrUn_random (52956942-52957072) | |
262-428, gnl|xenTro1|scaffold_100 (799283-799403) | |
262-428, gnl|xenTro1|scaffold_100 (799273-799409) | |
478-649, gnl|bosTau2|chrX (37979130-37978960) | |
478-649, gnl|canFam2|chrX (19621310-19621503) | |
478-649, gnl|danRer3|chr24 (10846970-10846780) | |
478-649, gnl|dasNov1|scaffold_164414 (4465-4667) | |
478-649, gnl|echTel1|scaffold_169610 (3187-3398) | |
478-649, gnl|fr1|chrUn (157269189-157269006) | |
478-649, gnl|galGal2|chr1 (111591413-111591218) | |
478-649, gnl|hg17|chrX (23840150-23840355) | |
478-649, gnl|Hg17|chrX (23840187-23840357) | |
478-649, gnl|loxAfr1|scaffold_1497 (5016-4812) | |
478-649, gnl|mm7|chrX (89590800-89590597) | |
478-649, gnl|Mm7|chrX (89590763-89590593) | |
478-649, gnl|monDom2|scaffold_48 (7865214-7865015) | |
478-649, gnl|oryCun1|scaffold_97480 (13506-13707) | |
478-649, gnl|panTro1|chrX (24674185-24674390) | |
478-649, gnl|rheMac2|chrX (21877645-21877851) | |
478-649, gnl|rn3|chrX (81631439-81631236) | |
478-649, gnl|tetNig1|chrUn_random (52957303-52957495) | |
478-649, gnl|xenTro1|scaffold_100 (802540-802734) | |
768-871, gnl|bosTau2|chrX (37976301-37976198) | |
768-871, gnl|canFam2|chrX (19625113-19625206) | |
768-871, gnl|canFam2|chrX (19625108-19625226) | |
768-871, gnl|danRer3|chr24 (10842822-10842729) | |
768-871, gnl|danRer3|chr24 (10842827-10842721) | |
768-871, gnl|dasNov1|scaffold_49073 (3420-3513) | |
768-871, gnl|dasNov1|scaffold_49073 (3420-3513) | |
768-871, gnl|echTel1|scaffold_169610 (6197-6306) | |
768-871, gnl|echTel1|scaffold_281329 (27962-28055) | |
768-871, gnl|fr1|chrUn (157268496-157268403) | |
768-871, gnl|fr1|chrUn (157268501-157268394) | |
768-871, gnl|galGal2|chr1 (111589841-111589760) | |
768-871, gnl|galGal2|chr1 (111589000-111588874) | |
768-871, gnl|hg17|chr12 (10550541-10550634) | |
768-871, gnl|hg17|chrX (23843767-23843885) | |
768-871, gnl|Hg17|chrX (23843766-23843868) | |
768-871, gnl|loxAfr1|scaffold_1497 (1343-1225) | |
768-871, gnl|loxAfr1|scaffold_48447 (1149-1226) | |
768-871, gnl|mm7|chrUn_random (2773515-2773422) | |
768-871, gnl|mm7|chrX (89587643-89587525) | |
768-871, gnl|Mm7|chrX (89587643-89587540) | |
768-871, gnl|monDom2|scaffold_48 (7863055-7862951) | |
768-871, gnl|monDom2|scaffold_66 (3912978-3912885) | |
768-871, gnl|oryCun1|scaffold_81796 (4515-4604) | |
768-871, gnl|oryCun1|scaffold_81796 (4506-4623) | |
768-871, gnl|panTro1|chrUn_random (36824550-36824643) | |
768-871, gnl|panTro1|chrUn_random (36824550-36824643) | |
768-871, gnl|rheMac2|chr4 (69781110-69781017) | |
768-871, gnl|rheMac2|chrX (21881300-21881418) | |
768-871, gnl|rn3|chrX (81627343-81627254) | |
768-871, gnl|rn3|chrX (81627352-81627234) | |
768-871, gnl|tetNig1|chrUn_random (52957845-52957938) | |
768-871, gnl|tetNig1|chrUn_random (52957840-52957958) | |
768-871, gnl|xenTro1|scaffold_100 (804265-804353) | |
768-871, gnl|xenTro1|scaffold_100 (804257-804360) | |
976-1776, gnl|bosTau2|chr28 (12225648-12224870) | |
976-1776, gnl|Hg17|chr12 (10550742-10551848) | |
976-1776, gnl|Mm7|chrUn_random (2773312-2771559) | |
1372-1493, gnl|bosTau2|chr25 (33379383-33379267) | |
1372-1493, gnl|Hg17|chr4 (114075851-114075706) | |
1372-1493, gnl|Mm7|chr7 (56834073-56833925) |
Expressed library(ies): 29 entry(ies) | More info |
Expressed library(ies): 29 entry(ies) | Help | Less info |
gul (0.710353) | |
hea (0.613497) | |
ski (0.586941) | |
sag (0.548145) | |
pan (0.471921) | |
spl (0.429553) | |
fli (0.405762) | |
elu (0.385356) | |
nco (0.323468) | |
lyg (0.266205) | |
ret (0.257467) | |
thg (0.253582) | |
bla (0.248694) | |
tra (0.246184) | |
eep (0.245128) | |
eru (0.240096) | |
nms (0.213858) | |
mas (0.210305) | |
ldo (0.194005) | |
lun (0.150489) | |
bfe (0.149858) | |
liv (0.146284) | |
lin (0.145603) | |
hlv (0.139256) | |
ste (0.135208) | |
pla (0.133672) | |
kid (0.129735) | |
ese (0.126502) | |
ecc (0.115035) |
Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
gul (0.710353) | |
hea (0.613497) | |
ski (0.586941) | |
sag (0.548145) | |
pan (0.471921) | |
spl (0.429553) | |
fli (0.405762) | |
elu (0.385356) | |
nco (0.323468) | |
lyg (0.266205) | |
ret (0.257467) | |
thg (0.253582) | |
bla (0.248694) | |
tra (0.246184) | |
eep (0.245128) | |
eru (0.240096) | |
nms (0.213858) | |
mas (0.210305) | |
ldo (0.194005) | |
lun (0.150489) | |
bfe (0.149858) | |
liv (0.146284) | |
lin (0.145603) | |
hlv (0.139256) | |
ste (0.135208) | |
pla (0.133672) | |
kid (0.129735) | |
ese (0.126502) | |
ecc (0.115035) |