Non-Coding RNA Search

Ss1.1-rgul0118_o14.5

Sequence:


               
               CTTTTCACAATTTATGCTTTCCCTTTGGAAAAACTCAAGAGCTTTAGATAATTTAAAGAT
CTGCATAGATTTTAGCAAAGCAATATCATACTTCCATAGCCATGCAACTTGAACAACTAA
AGTTGTTTAGAAGGTCAAAATCATGTCAAATTAGGAAGGTTATGTATTTCAGTAATATTT
ATCATTATTTCTTATTGAAATATTTCATGTTAATCTTAACATGAAATACAAATTTCATGT
TAACAATACAATAACAAATACAAACTTCAATAAAAAGTTTAGGATATTGCAAATCACACT
AACTATCTATACTTTATCTTTGAAATTCCTATAATTTCTGCTGTTTGAGCATTAGCTATC
TGCCGGCACCAAATCCAGACTCTTTATGTGTATTATCTCATTTAATCATCATTAACAACT
TACACATTACATAGAAAGTGGTAGATGAAAAAACTAAGGCATTGACAAATAAGGAACATA
ATTCCAGGTCACAGAGCAATTAAATATCAGAGCTTTTGTTCAGAACTTGGTGAGTTAGGG
CTCCAAATCTCATTATTCTGGACATGGTGTGGGCACTAGGACCAGGCATTAATATGAAAA
CCCAATTCTAATGGAATACATAGGATCTTTTAGAAAACCTATATTGATCTCACTTTTTAA
GGCTTTATTTAAAATATAGATGACTTCCAGAACTTCCAAGACTGTGGTTTATTTATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCACAATTTATGCTTTCCCTTTGGAAAAACTCAAGAGCTTTAGATAATTTAAAGAT
CTGCATAGATTTTAGCAAAGCAATATCATACTTCCATAGCCATGCAACTTGAACAACTAA
AGTTGTTTAGAAGGTCAAAATCATGTCAAATTAGGAAGGTTATGTATTTCAGTAATATTT
ATCATTATTTCTTATTGAAATATTTCATGTTAATCTTAACATGAAATACAAATTTCATGT
TAACAATACAATAACAAATACAAACTTCAATAAAAAGTTTAGGATATTGCAAATCACACT
AACTATCTATACTTTATCTTTGAAATTCCTATAATTTCTGCTGTTTGAGCATTAGCTATC
TGCCGGCACCAAATCCAGACTCTTTATGTGTATTATCTCATTTAATCATCATTAACAACT
TACACATTACATAGAAAGTGGTAGATGAAAAAACTAAGGCATTGACAAATAAGGAACATA
ATTCCAGGTCACAGAGCAATTAAATATCAGAGCTTTTGTTCAGAACTTGGTGAGTTAGGG
CTCCAAATCTCATTATTCTGGACATGGTGTGGGCACTAGGACCAGGCATTAATATGAAAA
CCCAATTCTAATGGAATACATAGGATCTTTTAGAAAACCTATATTGATCTCACTTTTTAA
GGCTTTATTTAAAATATAGATGACTTCCAGAACTTCCAAGACTGTGGTTTATTTATAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               83-235, gnl|bosTau2|chr3 (1564897-1564747)
               

               
               83-235, gnl|canFam2|chr16 (39857848-39858180)
               

               
               83-235, gnl|echTel1|scaffold_315842 (30103-29669)
               

               
               83-235, gnl|hg17|chr8 (13371402-13371757)
               

               
               83-235, gnl|Hg17|chr8 (13371666-13371499)
               

               
               83-235, gnl|loxAfr1|scaffold_5447 (33718-34073)
               

               
               83-235, gnl|mm7|chr8 (35679489-35679838)
               

               
               83-235, gnl|Mm7|chr8 (35679752-35679585)
               

               
               83-235, gnl|panTro1|chr7 (13979298-13979654)
               

               
               83-235, gnl|rheMac2|chr8 (13284431-13284787)
               

               
               83-235, gnl|rn3|chr16 (59019987-59019633)
               


               
               402-572, gnl|bosTau2|chr3 (1564255-1564086)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-235, gnl|bosTau2|chr3 (1564897-1564747)
               

               
               83-235, gnl|canFam2|chr16 (39857848-39858180)
               

               
               83-235, gnl|echTel1|scaffold_315842 (30103-29669)
               

               
               83-235, gnl|hg17|chr8 (13371402-13371757)
               

               
               83-235, gnl|Hg17|chr8 (13371666-13371499)
               

               
               83-235, gnl|loxAfr1|scaffold_5447 (33718-34073)
               

               
               83-235, gnl|mm7|chr8 (35679489-35679838)
               

               
               83-235, gnl|Mm7|chr8 (35679752-35679585)
               

               
               83-235, gnl|panTro1|chr7 (13979298-13979654)
               

               
               83-235, gnl|rheMac2|chr8 (13284431-13284787)
               

               
               83-235, gnl|rn3|chr16 (59019987-59019633)
               


               
               402-572, gnl|bosTau2|chr3 (1564255-1564086)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               fat (0.147427)

	83-235, gnl\|bosTau2\|chr3 (1564897-1564747)
	83-235, gnl\|canFam2\|chr16 (39857848-39858180)
	83-235, gnl\|echTel1\|scaffold_315842 (30103-29669)
	83-235, gnl\|hg17\|chr8 (13371402-13371757)
	83-235, gnl\|Hg17\|chr8 (13371666-13371499)
	83-235, gnl\|loxAfr1\|scaffold_5447 (33718-34073)
	83-235, gnl\|mm7\|chr8 (35679489-35679838)
	83-235, gnl\|Mm7\|chr8 (35679752-35679585)
	83-235, gnl\|panTro1\|chr7 (13979298-13979654)
	83-235, gnl\|rheMac2\|chr8 (13284431-13284787)
	83-235, gnl\|rn3\|chr16 (59019987-59019633)

	402-572, gnl\|bosTau2\|chr3 (1564255-1564086)