Non-Coding RNA Search

Ss1.1-rgul0123_a14.5

Sequence:


               
               TCCCCAACTGGCATTGACTTCTCTGATATCACCGCCAACTCTTTCACTGTGTACTGGATC
GCTCCTCGCGCCACCATTACTGGCTACAAGATCCGCCATCACCCTGAGCACATGGGTGGA
AGACCTCGGGAAGATCGCGTGCCCCCCTCTCGGAATTCCATCACTCTCACCAACCTCATT
CCAGGCGTGGAATATGTGGTCAGCATCGTCGCTGTTAATGGCAGAGAGGAAAGCCCTCCC
TTGGTCGGCCAACAATCAACAGTTTCTGATGTTCCAAGGGACCTGCAAGTCATTGCCACA
ACCCCCACTAGCCTGTTGATCAGCTGGGATGCTCCTGCTGTCACAGTGAGATATTACAGG
ATCACGTATGGAGAAACAGGAGGAAATAGCCCTGTCCAGGAGTTCACTGTGCCTGGGAGC
AAGTCTACAGCTACCATCAGTGGCCTTAAGCCTGGAGTAGACTACACCATCACCGTCTAT
GCTGTCACTGGCCGTGGGGATAGCCCAGCAAGCAGCAAGCCCGTTTCCATTGATTATCGA
ACAGAAATTGATAAACCATCCCAGATGCAAGTGACTGATGTCCAGGACAACAGCATCAGT
GTCAGGTGGCTGCCTTCAAGTTCCCATGTTACTGGTTACAGAGTGACCACTACTCCTAAA
AATGGCTCAGGACCATCAAAAACGAAAACTGTTGGTCCAGATCAAACAGAAATGACAATA
GAAGGCTTGCAGCCCACAGTGGAGTATGTGGTTAGTGTCTACGCTCAGAATCAAAACGGA
GAGAGTCAGCCTCTGGTTCAGACAGCGGTAACCACCATTCCTGCGCCAACCAACCTGAAG
TTCACTCAGGTAACACCCACAAGCCTGACTGCCCAGTGGACAGCCCCCAACGTTCAGCTC
ACTGGGTATCGAGTGCGGGTGACCCCTAAGGAGAAGACCGGGCCAATGAAGGAAATCAAC
CTTGCTCCTGATAGCTCCTCTGTGGTCGTATCAGGACTCATGGTGGCCACCAAGTATGAA
GTGAGCATCTATGCTCTTAAGGACACTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACG
ACCCTGGAGAATGTCAGTCCTCCAAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACC
ATCACCATTAGCTGGAGGACCAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTC
CCAGCCAATGGCCAGACTCCAATCCAGAGAACCATCAAGCCAGATGTCAGGAGCTACACC
ATCACAGGTTTACAACCCGGCACTGACTACAAGATCTACTTGTACACCCTGAATGACAAT
GCCCGGAGCTCCCCTGTGGTCATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTG
CGTTTCCTGGCCACCACACCCAATTCCTTGTTGGTATCATGGCAGCCACCCCGTGCCAAG
ATTACTGGTTACATCATCAAGTATGAGAAGCCTGGGTCCCCTCCCAGAGAAGTGGTCCCT
CGGCCCCGCCCTAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGATGAGCTT
CCCCAACTGGTAACCCTTCCACACCCCAATCTTCATGGACCAGAGATCTTGGATGTTCCC
TCCACAGTTCAAAAGACCCCTTTCGTCACCAAACCCGGGTATGACACTGGAAACGGTATT
CAGCTTCCTGGCACTTCTGGTCAGCAGCCCAGTCTTGGGCAACAAATGATCTTTGAGGAG
CATGGTTTTAGGAGAACCACACCGCCCACAACGGCCACCCCCGTAAGGCATAGGCCAGGA
CCGTATACGCCGAATGTAAATGAGGAGATCCAAGTTGGTCATGTCCCCAGGGGAGACGTA
GACCATCACCTCTACCCTCACGTTCTGGGACTCAATCCAAATGCTTCTACAGGACAAGAA
GCTCTCTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATT
TCATGTCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGAACTTCT
GCTAGTGCCACCTTGACGGGTCTCACCAGAGGTGCCACCTACAACATCATAGTGGAGGCA
CTAAAAGACCAGAAGAGGCACAAGATTCGGGAGGAGGTGGTTACCGTGGGCAATTCTGTT
GACCAAGGCCTAAGCCAACCCACGGATGACTCGTGCTTCGACCCCTACACGGTTTCCCAT
TATGCCATCGGAGAAGAGTGGGAGCGATTATCTGAATCTGGCTTTAAGCTCTCGTGCCAG
TGCTTAGGCTTTGGCAGTGGTCATTTCAGATGTGATTCATCTAAATGGTGCCATGACAAT
GGTGTGAATTACAAGATTGGAGAGAAGTGGGATCGTCAGGGAGAGAATGGCCAGATGATG
AGCTGCACATGTCTCGGAAATGGAAAAGGAGAATTCAAGTGTGATCCCCATGAAGCGACG
TGTTATGATGATGGGAAGACATACCATGTGGGAGAACAGTGGCAGAAGGAATATCTCGGT
GCCATTTGCTCCTGCACATGCTTTGGAGGCCAGCGGGGCTGGCGCTGTGACAACTGCCGC
AGACCAGGGGCTGAACTCGGTCCCGAAGGCTCCACCGGGCACTCCTACAACCAGTATTCA
CAGAGATACCATCAGAGAACAAACACCAATGTCAACTGCCCAATTGAGTGCTTCATGCCT
TTAGATGTACAGGCTGACATAGAAGATTCCCGAGAGTAAAATTTCCAAGCTGGAGAAACA
AGCACGGATCTCTGCCAAGGTCCATCCAAACTGGAGTGATGTTAGCAGACCCCATCCCAG
TTTGTTTCTTTCTTAAGCCCTTTGCTCTGGAGTAATTTCTTCAGCTTCAGCTCAACTCAC
AGCTTCTCCAAGCATCACCCTGGGAGTGTTTTGAGACTTTTCTCATAAATGGCAGTACAT
GGCCTGCTCTCCAAAGTGTTCAGTACCGCTCAATATTTTAAATGAAATGATTCTAACTTG
TGATCTGAATTGGGATCAGTAGGGTTGCACATGTACCAACCAAGATGCAAAATGTCTTGA
AATGATATTACCAAAAATTTTAAGTAGGAAAGTTACCCAAACACTTCTGCTTCCACTTAA
CTGTCTGGCCCGCAATATTGTAGGAACAGCATATCCTTGTTACTGTGATATTTAAAATAT
CCACAGTACTCACTTTTTCCAGATGACTTTGGTAATTGCCTAGAAATATCTTTCTCTTAC
CTGTTATTTATCAATTTTTCCCAGTATTTTTATATGGAATCAAATTGTATTGAAGACAGT
TAGTAGGCAGTTGATAAGAGGAATTTGGTATAATTATGGTTGGTGATTATTTTTTATACT
GTACGTGCCAAAGCTTTACTACTGTGGAAAGACAACTGTTTAGTAAAAGATTTACATTCC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCAACTGGCATTGACTTCTCTGATATCACCGCCAACTCTTTCACTGTGTACTGGATC
GCTCCTCGCGCCACCATTACTGGCTACAAGATCCGCCATCACCCTGAGCACATGGGTGGA
AGACCTCGGGAAGATCGCGTGCCCCCCTCTCGGAATTCCATCACTCTCACCAACCTCATT
CCAGGCGTGGAATATGTGGTCAGCATCGTCGCTGTTAATGGCAGAGAGGAAAGCCCTCCC
TTGGTCGGCCAACAATCAACAGTTTCTGATGTTCCAAGGGACCTGCAAGTCATTGCCACA
ACCCCCACTAGCCTGTTGATCAGCTGGGATGCTCCTGCTGTCACAGTGAGATATTACAGG
ATCACGTATGGAGAAACAGGAGGAAATAGCCCTGTCCAGGAGTTCACTGTGCCTGGGAGC
AAGTCTACAGCTACCATCAGTGGCCTTAAGCCTGGAGTAGACTACACCATCACCGTCTAT
GCTGTCACTGGCCGTGGGGATAGCCCAGCAAGCAGCAAGCCCGTTTCCATTGATTATCGA
ACAGAAATTGATAAACCATCCCAGATGCAAGTGACTGATGTCCAGGACAACAGCATCAGT
GTCAGGTGGCTGCCTTCAAGTTCCCATGTTACTGGTTACAGAGTGACCACTACTCCTAAA
AATGGCTCAGGACCATCAAAAACGAAAACTGTTGGTCCAGATCAAACAGAAATGACAATA
GAAGGCTTGCAGCCCACAGTGGAGTATGTGGTTAGTGTCTACGCTCAGAATCAAAACGGA
GAGAGTCAGCCTCTGGTTCAGACAGCGGTAACCACCATTCCTGCGCCAACCAACCTGAAG
TTCACTCAGGTAACACCCACAAGCCTGACTGCCCAGTGGACAGCCCCCAACGTTCAGCTC
ACTGGGTATCGAGTGCGGGTGACCCCTAAGGAGAAGACCGGGCCAATGAAGGAAATCAAC
CTTGCTCCTGATAGCTCCTCTGTGGTCGTATCAGGACTCATGGTGGCCACCAAGTATGAA
GTGAGCATCTATGCTCTTAAGGACACTTTGACAAGCAGACCAGCTCAGGGAGTTGTCACG
ACCCTGGAGAATGTCAGTCCTCCAAGAAGGGCCCGGGTGACAGATGCTACTGAGACCACC
ATCACCATTAGCTGGAGGACCAAGACTGAGACGATCACCGGCTTCCAAGTTGATGCCGTC
CCAGCCAATGGCCAGACTCCAATCCAGAGAACCATCAAGCCAGATGTCAGGAGCTACACC
ATCACAGGTTTACAACCCGGCACTGACTACAAGATCTACTTGTACACCCTGAATGACAAT
GCCCGGAGCTCCCCTGTGGTCATCGATGCCTCCACTGCCATCGATGCACCATCCAACTTG
CGTTTCCTGGCCACCACACCCAATTCCTTGTTGGTATCATGGCAGCCACCCCGTGCCAAG
ATTACTGGTTACATCATCAAGTATGAGAAGCCTGGGTCCCCTCCCAGAGAAGTGGTCCCT
CGGCCCCGCCCTAATCAGAAGAGTGAGCCTCTGATCGGGAGGAAAAGGACAGATGAGCTT
CCCCAACTGGTAACCCTTCCACACCCCAATCTTCATGGACCAGAGATCTTGGATGTTCCC
TCCACAGTTCAAAAGACCCCTTTCGTCACCAAACCCGGGTATGACACTGGAAACGGTATT
CAGCTTCCTGGCACTTCTGGTCAGCAGCCCAGTCTTGGGCAACAAATGATCTTTGAGGAG
CATGGTTTTAGGAGAACCACACCGCCCACAACGGCCACCCCCGTAAGGCATAGGCCAGGA
CCGTATACGCCGAATGTAAATGAGGAGATCCAAGTTGGTCATGTCCCCAGGGGAGACGTA
GACCATCACCTCTACCCTCACGTTCTGGGACTCAATCCAAATGCTTCTACAGGACAAGAA
GCTCTCTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAATATATCATT
TCATGTCATCCCGTGGGCATTGATGAAGAACCCTTGCAGTTCCGAGTTCCTGGAACTTCT
GCTAGTGCCACCTTGACGGGTCTCACCAGAGGTGCCACCTACAACATCATAGTGGAGGCA
CTAAAAGACCAGAAGAGGCACAAGATTCGGGAGGAGGTGGTTACCGTGGGCAATTCTGTT
GACCAAGGCCTAAGCCAACCCACGGATGACTCGTGCTTCGACCCCTACACGGTTTCCCAT
TATGCCATCGGAGAAGAGTGGGAGCGATTATCTGAATCTGGCTTTAAGCTCTCGTGCCAG
TGCTTAGGCTTTGGCAGTGGTCATTTCAGATGTGATTCATCTAAATGGTGCCATGACAAT
GGTGTGAATTACAAGATTGGAGAGAAGTGGGATCGTCAGGGAGAGAATGGCCAGATGATG
AGCTGCACATGTCTCGGAAATGGAAAAGGAGAATTCAAGTGTGATCCCCATGAAGCGACG
TGTTATGATGATGGGAAGACATACCATGTGGGAGAACAGTGGCAGAAGGAATATCTCGGT
GCCATTTGCTCCTGCACATGCTTTGGAGGCCAGCGGGGCTGGCGCTGTGACAACTGCCGC
AGACCAGGGGCTGAACTCGGTCCCGAAGGCTCCACCGGGCACTCCTACAACCAGTATTCA
CAGAGATACCATCAGAGAACAAACACCAATGTCAACTGCCCAATTGAGTGCTTCATGCCT
TTAGATGTACAGGCTGACATAGAAGATTCCCGAGAGTAAAATTTCCAAGCTGGAGAAACA
AGCACGGATCTCTGCCAAGGTCCATCCAAACTGGAGTGATGTTAGCAGACCCCATCCCAG
TTTGTTTCTTTCTTAAGCCCTTTGCTCTGGAGTAATTTCTTCAGCTTCAGCTCAACTCAC
AGCTTCTCCAAGCATCACCCTGGGAGTGTTTTGAGACTTTTCTCATAAATGGCAGTACAT
GGCCTGCTCTCCAAAGTGTTCAGTACCGCTCAATATTTTAAATGAAATGATTCTAACTTG
TGATCTGAATTGGGATCAGTAGGGTTGCACATGTACCAACCAAGATGCAAAATGTCTTGA
AATGATATTACCAAAAATTTTAAGTAGGAAAGTTACCCAAACACTTCTGCTTCCACTTAA
CTGTCTGGCCCGCAATATTGTAGGAACAGCATATCCTTGTTACTGTGATATTTAAAATAT
CCACAGTACTCACTTTTTCCAGATGACTTTGGTAATTGCCTAGAAATATCTTTCTCTTAC
CTGTTATTTATCAATTTTTCCCAGTATTTTTATATGGAATCAAATTGTATTGAAGACAGT
TAGTAGGCAGTTGATAAGAGGAATTTGGTATAATTATGGTTGGTGATTATTTTTTATACT
GTACGTGCCAAAGCTTTACTACTGTGGAAAGACAACTGTTTAGTAAAAGATTTACATTCC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-262, gnl|bosTau2|chr2 (47467503-47467764)
               

               
               1-262, gnl|Hg17|chr2 (216077179-216076918)
               

               
               1-262, gnl|Mm7|chr1 (71851515-71851254)
               


               
               2158-2323, gnl|bosTau2|chr2 (47483380-47483545)
               

               
               2158-2323, gnl|Hg17|chr2 (216058257-216058092)
               

               
               2158-2323, gnl|Mm7|chr1 (71835077-71834912)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr2 (47467503-47467764)
               

               
               1-262, gnl|Hg17|chr2 (216077179-216076918)
               

               
               1-262, gnl|Mm7|chr1 (71851515-71851254)
               


               
               2158-2323, gnl|bosTau2|chr2 (47483380-47483545)
               

               
               2158-2323, gnl|Hg17|chr2 (216058257-216058092)
               

               
               2158-2323, gnl|Mm7|chr1 (71835077-71834912)

Expressed library(ies): 70 entry(ies)

More info

Expressed library(ies): 70 entry(ies)

Help | Less info


               
               amn (11.6959)
               

               
               gul (6.57077)
               

               
               lun (5.86907)
               

               
               jca (3.87464)
               

               
               tra (3.32349)
               

               
               aor (3.31966)
               

               
               eru (2.88115)
               

               
               ski (2.64123)
               

               
               fat (2.50627)
               

               
               liv (2.19427)
               

               
               rec (2.07684)
               

               
               lin (2.03844)
               

               
               bla (1.98955)
               

               
               csk (1.68895)
               

               
               ute (1.46063)
               

               
               cli (1.37531)
               

               
               mga (1.28164)
               

               
               nca (1.23186)
               

               
               bfe (1.049)
               

               
               ret (1.02987)
               

               
               thg (1.01433)
               

               
               ese (1.01202)
               

               
               mgm (0.901713)
               

               
               elu (0.770713)
               

               
               sto (0.719295)
               

               
               cut (0.679694)
               

               
               mas (0.630915)
               

               
               eep (0.61282)
               

               
               sme (0.610874)
               

               
               cly (0.603209)
               

               
               ldo (0.582016)
               

               
               cmu (0.55918)
               

               
               nmm (0.531209)
               

               
               tbr (0.462535)
               

               
               cst (0.420109)
               

               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               clu (0.358938)
               

               
               ton (0.351)
               

               
               eye (0.341006)
               

               
               eli (0.303628)
               

               
               isp (0.300752)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               ssp (0.271039)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 70 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (11.6959)
               

               
               gul (6.57077)
               

               
               lun (5.86907)
               

               
               jca (3.87464)
               

               
               tra (3.32349)
               

               
               aor (3.31966)
               

               
               eru (2.88115)
               

               
               ski (2.64123)
               

               
               fat (2.50627)
               

               
               liv (2.19427)
               

               
               rec (2.07684)
               

               
               lin (2.03844)
               

               
               bla (1.98955)
               

               
               csk (1.68895)
               

               
               ute (1.46063)
               

               
               cli (1.37531)
               

               
               mga (1.28164)
               

               
               nca (1.23186)
               

               
               bfe (1.049)
               

               
               ret (1.02987)
               

               
               thg (1.01433)
               

               
               ese (1.01202)
               

               
               mgm (0.901713)
               

               
               elu (0.770713)
               

               
               sto (0.719295)
               

               
               cut (0.679694)
               

               
               mas (0.630915)
               

               
               eep (0.61282)
               

               
               sme (0.610874)
               

               
               cly (0.603209)
               

               
               ldo (0.582016)
               

               
               cmu (0.55918)
               

               
               nmm (0.531209)
               

               
               tbr (0.462535)
               

               
               cst (0.420109)
               

               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               clu (0.358938)
               

               
               ton (0.351)
               

               
               eye (0.341006)
               

               
               eli (0.303628)
               

               
               isp (0.300752)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               ssp (0.271039)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	1-262, gnl\|bosTau2\|chr2 (47467503-47467764)
	1-262, gnl\|Hg17\|chr2 (216077179-216076918)
	1-262, gnl\|Mm7\|chr1 (71851515-71851254)

	2158-2323, gnl\|bosTau2\|chr2 (47483380-47483545)
	2158-2323, gnl\|Hg17\|chr2 (216058257-216058092)
	2158-2323, gnl\|Mm7\|chr1 (71835077-71834912)

	amn (11.6959)
	gul (6.57077)
	lun (5.86907)
	jca (3.87464)
	tra (3.32349)
	aor (3.31966)
	eru (2.88115)
	ski (2.64123)
	fat (2.50627)
	liv (2.19427)
	rec (2.07684)
	lin (2.03844)
	bla (1.98955)
	csk (1.68895)
	ute (1.46063)
	cli (1.37531)
	mga (1.28164)
	nca (1.23186)
	bfe (1.049)
	ret (1.02987)
	thg (1.01433)
	ese (1.01202)
	mgm (0.901713)
	elu (0.770713)
	sto (0.719295)
	cut (0.679694)
	mas (0.630915)
	eep (0.61282)
	sme (0.610874)
	cly (0.603209)
	ldo (0.582016)
	cmu (0.55918)
	nmm (0.531209)
	tbr (0.462535)
	cst (0.420109)
	che (0.408942)
	ova (0.387397)
	clu (0.358938)
	ton (0.351)
	eye (0.341006)
	eli (0.303628)
	isp (0.300752)
	lnt (0.284616)
	cga (0.279096)
	ssp (0.271039)
	med (0.232504)
	mgp (0.230681)
	spc (0.226732)
	cty (0.20816)
	hea (0.204499)
	nbm (0.198649)
	fcc (0.197785)
	eje (0.197668)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	sin (0.174948)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	cag (0.151194)
	spl (0.143184)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	sug (0.127291)
	pgl (0.118483)
	jej (0.0989218)