Non-Coding RNA Search

Ss1.1-rgul0123_o6.5

Sequence:


               
               TTTTTTTTTAACATTAATATGTCTGATATATATACAGTTTTGGAGACAATCAAGTAACAA
CTGAAAATGTGAAAGTAACCATTTTTTACAAAATTCCCTTGTATTTTTATCTTTGCTTGA
AACATGTAAAAAGATTTAAGTCACTGTTGTTTATTGGATTATATTTTTTTCCTGTTAATG
CAGTTATAAAAATAGAATCAGACAATGGATGCAGGAAATGTGGTCCTTTCATAAAATTAC
ACTGACTTCCCTGTTACTTGATCTTAGGAACCAGTACAGTTAAAGATAAGATATTGTGAA
TGCTGATTTTAAAAGCTGTAAAATCTAAATAGATACTATTGTGTAGGGTCTAGTCCAGTT
ATTTAAGTTCCGTTTAAATATTTGCACTTTGCATTAAACAATGGGTTTTATTTGCTGATG
AGTAGAGGATTTATACACTAACTGAAATTATGGTATATATACACATGTCCTTCTCCCCAC
CCCCTACACAAGAAAGTAGAAAATAAGCTCATTTAAATATGAATGTGGCCATAATTCTAT
GGAATGTGATAAACCTTGAATTTCTTTTCCTGGGCTCCACACGGTCAACCTGGAGACCAA
AAAGGTTATAGAAACACCATGTCAGACGATACAGTTAGTTAGAAGGAATGAATATGTTTA
GGTGGGACAACAAAAACTTTTCAACCCCCCCCCAAAAGAAATCAGTGAAGCTCTACTTAT
TAAAGACAAAAGTTACCTATGAGCTCTGCCTTTCAGCTCTGAACTTGAAGTCCCTAAACT
GCAAGATCTAAATAAGAGTTGGATATTTTTAGGTCAACCATGGCACTAATTCTCATTTAG
TCCAAATTGTGACTCGTTTCTTCTCATCTCTTCTTTTTTTTGGCACTGGGAAAGGTAGAA
ACAAATCATGTAATGAAATAGGTAAAAATGGCTTGAGTGTCAGTTATATTCTCCCAGAAT
GTACTTTTCTTACCTCGGCATGTACTGTAGTCACTCAGTATTTGTATATGTTGCTAGAAT
TTAGATTGTATAAATAGTGAGATTTTAATGTGTTCATGTGTTTTTAATAAATTGTATATG
TGTCTTGCTCAGATATTTTTTTAAATATACCACCTTGAGGTTTATAGTCGTTTCTCATAC
TATATAAAATGCCACATTCCTCAATTTTAAGATTTCGTCAGAAATTTTTATGGCCAATAT
TATAGAATGATGGTAACATTGCTTATATTCATTAAAATGAAATGGGAGACTAGCTCACCA
CTTTTGTCCAGTTGGCTTGTTTGCATCCCACAAGATTCTTCTCTGCTGCATGCTAGGTAA
GCTTTCCATTTGAAGACACAGTTTATACATGTGGACAGTTGATTTTTCATGAGAATACCA
TTTAAATCCAGAAACAGCTTGGCTTTTCTTAAAGGTTTACTCATTTACATCTTCTGTTTT
TCCTTGCAATAAACTTCCAAAATTTAATGAATAAATTAAGCCAGGAAAAAAAATAATGTG
TAACAATTTTCTCCTTGAGCTTGCCTAATTCAGCTTTGTATAAATTGTATTTCTTTAAAA
TAATGCAGCTACCAGCCTTTAGTAATTGCATTCTTTGGTTATTTACTTATCCAGAATTCA
TATTTATGCTATTTCTTTGGACTTAAAAACAAAAAAAATCTTCCTGCTACCCAACTACTC
ATCATAATCATGGTTTACTTCACTGCAGGGAAAAATGCTTAGTTACGCCAATATGATCTT
AAGAGTTCCAAAGCCACCCACCCCTTCAAACCTGGTTTAAGATTCCAGTCAATCAAGTTC
CACAAAAAGGAGCCAAATAGTCATCCAGATAGAGGCCTGAAGTGGTTCCAGTATGCCATG
TCAGAGCACTGCCACATGACCATTACCCATCAATTTACAGTGGCCAGATAAACCTCTCAA
AATGTCAAGTTGTATTAAAATTTTGTTGTGGTAAACCCAATCCCCTTACTTATTAGGAAG
TCCCATCTCTTTAAAAGTCTAAGATGAAGTAACTATAAAAAGATGTTTAAAAACACTTCA
GAAAACTAGCTTATTTTTAAAACAAGGCAATGAAACCTTCACTTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTAACATTAATATGTCTGATATATATACAGTTTTGGAGACAATCAAGTAACAA
CTGAAAATGTGAAAGTAACCATTTTTTACAAAATTCCCTTGTATTTTTATCTTTGCTTGA
AACATGTAAAAAGATTTAAGTCACTGTTGTTTATTGGATTATATTTTTTTCCTGTTAATG
CAGTTATAAAAATAGAATCAGACAATGGATGCAGGAAATGTGGTCCTTTCATAAAATTAC
ACTGACTTCCCTGTTACTTGATCTTAGGAACCAGTACAGTTAAAGATAAGATATTGTGAA
TGCTGATTTTAAAAGCTGTAAAATCTAAATAGATACTATTGTGTAGGGTCTAGTCCAGTT
ATTTAAGTTCCGTTTAAATATTTGCACTTTGCATTAAACAATGGGTTTTATTTGCTGATG
AGTAGAGGATTTATACACTAACTGAAATTATGGTATATATACACATGTCCTTCTCCCCAC
CCCCTACACAAGAAAGTAGAAAATAAGCTCATTTAAATATGAATGTGGCCATAATTCTAT
GGAATGTGATAAACCTTGAATTTCTTTTCCTGGGCTCCACACGGTCAACCTGGAGACCAA
AAAGGTTATAGAAACACCATGTCAGACGATACAGTTAGTTAGAAGGAATGAATATGTTTA
GGTGGGACAACAAAAACTTTTCAACCCCCCCCCAAAAGAAATCAGTGAAGCTCTACTTAT
TAAAGACAAAAGTTACCTATGAGCTCTGCCTTTCAGCTCTGAACTTGAAGTCCCTAAACT
GCAAGATCTAAATAAGAGTTGGATATTTTTAGGTCAACCATGGCACTAATTCTCATTTAG
TCCAAATTGTGACTCGTTTCTTCTCATCTCTTCTTTTTTTTGGCACTGGGAAAGGTAGAA
ACAAATCATGTAATGAAATAGGTAAAAATGGCTTGAGTGTCAGTTATATTCTCCCAGAAT
GTACTTTTCTTACCTCGGCATGTACTGTAGTCACTCAGTATTTGTATATGTTGCTAGAAT
TTAGATTGTATAAATAGTGAGATTTTAATGTGTTCATGTGTTTTTAATAAATTGTATATG
TGTCTTGCTCAGATATTTTTTTAAATATACCACCTTGAGGTTTATAGTCGTTTCTCATAC
TATATAAAATGCCACATTCCTCAATTTTAAGATTTCGTCAGAAATTTTTATGGCCAATAT
TATAGAATGATGGTAACATTGCTTATATTCATTAAAATGAAATGGGAGACTAGCTCACCA
CTTTTGTCCAGTTGGCTTGTTTGCATCCCACAAGATTCTTCTCTGCTGCATGCTAGGTAA
GCTTTCCATTTGAAGACACAGTTTATACATGTGGACAGTTGATTTTTCATGAGAATACCA
TTTAAATCCAGAAACAGCTTGGCTTTTCTTAAAGGTTTACTCATTTACATCTTCTGTTTT
TCCTTGCAATAAACTTCCAAAATTTAATGAATAAATTAAGCCAGGAAAAAAAATAATGTG
TAACAATTTTCTCCTTGAGCTTGCCTAATTCAGCTTTGTATAAATTGTATTTCTTTAAAA
TAATGCAGCTACCAGCCTTTAGTAATTGCATTCTTTGGTTATTTACTTATCCAGAATTCA
TATTTATGCTATTTCTTTGGACTTAAAAACAAAAAAAATCTTCCTGCTACCCAACTACTC
ATCATAATCATGGTTTACTTCACTGCAGGGAAAAATGCTTAGTTACGCCAATATGATCTT
AAGAGTTCCAAAGCCACCCACCCCTTCAAACCTGGTTTAAGATTCCAGTCAATCAAGTTC
CACAAAAAGGAGCCAAATAGTCATCCAGATAGAGGCCTGAAGTGGTTCCAGTATGCCATG
TCAGAGCACTGCCACATGACCATTACCCATCAATTTACAGTGGCCAGATAAACCTCTCAA
AATGTCAAGTTGTATTAAAATTTTGTTGTGGTAAACCCAATCCCCTTACTTATTAGGAAG
TCCCATCTCTTTAAAAGTCTAAGATGAAGTAACTATAAAAAGATGTTTAAAAACACTTCA
GAAAACTAGCTTATTTTTAAAACAAGGCAATGAAACCTTCACTTATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1220, gnl|bosTau2|chr1 (22644704-22643450)
               

               
               1-1220, gnl|Hg17|chr3 (99998585-99997439)
               

               
               1-1220, gnl|Mm7|chr16 (58404184-58405339)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1220, gnl|bosTau2|chr1 (22644704-22643450)
               

               
               1-1220, gnl|Hg17|chr3 (99998585-99997439)
               

               
               1-1220, gnl|Mm7|chr16 (58404184-58405339)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               gul (0.887942)
               

               
               sug (0.763747)
               

               
               isp (0.451128)
               

               
               fat (0.442282)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.887942)
               

               
               sug (0.763747)
               

               
               isp (0.451128)
               

               
               fat (0.442282)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-1220, gnl\|bosTau2\|chr1 (22644704-22643450)
	1-1220, gnl\|Hg17\|chr3 (99998585-99997439)
	1-1220, gnl\|Mm7\|chr16 (58404184-58405339)

	gul (0.887942)
	sug (0.763747)
	isp (0.451128)
	fat (0.442282)
	thg (0.380373)
	vin (0.332557)
	ret (0.257467)
	mgp (0.230681)
	spc (0.226732)
	aor (0.195274)
	sin (0.174948)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	ova (0.129132)
	ecc (0.115035)
	cty (0.10408)