Non-Coding RNA Search

Ss1.1-rgul0123_o8.5

Sequence:


               
               GCTTCCCCCAGGTGTGGTTGGCCCCCCCGGAGGAATGGTGGGACAGATGGGTGCACCCCA
GAGCAAGTTTGGCCTGCCGCCAGCACAGCAGCCCCAGTGGAATCTCTCACAGGTGAACCA
GCAAATGTCTGGCCTGAGCTTGGGCAGCACGGCCCCCGCGGGGGCCCTCGGCCAGCCCCC
CAGCACCACAGCGGGCTGGGCAGGGAGCTCGTCGGGTCAGACGCTCAGCACACAGCTGTG
GAAGTGAGCACGCAGCACCTCCTCCAAGGCGCCCGCGGCCTTCTTGCTGCAACGCATCCA
GCTCCCCTGTTCATTCATGTACATATTTTTTTCCCCTCATTTGTTCATATTAAGAATTAT
CTGATCGACCGTGTTGGTCTGTGCTGATTAAATTTGATGTGGTGAAAAGCAGGTTGAGAA
ACCATTTCATATCAAGGGCGCCTTTGCCCGTAACTCCCATGATGTCATAGACACCTTATC
TGAGAAGCTGCTCAGTCAACCTGCATAATGGGTTTCACTCTCGATGCAACTGTAGCTCTA
ACGTTTGCATATAAGGGCAGTAGTTATCATGTTAGTAATACTTCTAACAGTATAACCCCA
CCCCCAAATTAGCCAGTAATCCTGTAGGAAGGTACTGTATGATCAAATGTTTAATCATAT
AAATAGAATGTAAGTGTGTCACTGAGCACTGCTCCCATGTGTAGCCAGATTCTTTTATTC
CATCAGTCACTTTACTGTGCTGTTGTTATGATGTGCTTAACAGGGAACGTGGCTAGTGAA
AGGAAGATAAACCTGGATGTCACTACAAAACTTAGTTTAGCAAATGTTCAAAGAAGTCAG
GTTTTGTACCTGCCTCTCTCAGAGTTTGGCTCTCTTCCTGTGTCCACACAGTGCTAACAT
GAAGACCTTCTGTGCACTCGATGCAAACAGGGTAACTAAACAAGCCACTTCAGTCCTTGA
AGGTGTATCCAGGTCCATGATGGTAATTGTGTTTACATTTTATGGTGCCTAGTACTGACA
GATGTTATATCCCTATATTAAACGGATGAATCCATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCCCCAGGTGTGGTTGGCCCCCCCGGAGGAATGGTGGGACAGATGGGTGCACCCCA
GAGCAAGTTTGGCCTGCCGCCAGCACAGCAGCCCCAGTGGAATCTCTCACAGGTGAACCA
GCAAATGTCTGGCCTGAGCTTGGGCAGCACGGCCCCCGCGGGGGCCCTCGGCCAGCCCCC
CAGCACCACAGCGGGCTGGGCAGGGAGCTCGTCGGGTCAGACGCTCAGCACACAGCTGTG
GAAGTGAGCACGCAGCACCTCCTCCAAGGCGCCCGCGGCCTTCTTGCTGCAACGCATCCA
GCTCCCCTGTTCATTCATGTACATATTTTTTTCCCCTCATTTGTTCATATTAAGAATTAT
CTGATCGACCGTGTTGGTCTGTGCTGATTAAATTTGATGTGGTGAAAAGCAGGTTGAGAA
ACCATTTCATATCAAGGGCGCCTTTGCCCGTAACTCCCATGATGTCATAGACACCTTATC
TGAGAAGCTGCTCAGTCAACCTGCATAATGGGTTTCACTCTCGATGCAACTGTAGCTCTA
ACGTTTGCATATAAGGGCAGTAGTTATCATGTTAGTAATACTTCTAACAGTATAACCCCA
CCCCCAAATTAGCCAGTAATCCTGTAGGAAGGTACTGTATGATCAAATGTTTAATCATAT
AAATAGAATGTAAGTGTGTCACTGAGCACTGCTCCCATGTGTAGCCAGATTCTTTTATTC
CATCAGTCACTTTACTGTGCTGTTGTTATGATGTGCTTAACAGGGAACGTGGCTAGTGAA
AGGAAGATAAACCTGGATGTCACTACAAAACTTAGTTTAGCAAATGTTCAAAGAAGTCAG
GTTTTGTACCTGCCTCTCTCAGAGTTTGGCTCTCTTCCTGTGTCCACACAGTGCTAACAT
GAAGACCTTCTGTGCACTCGATGCAAACAGGGTAACTAAACAAGCCACTTCAGTCCTTGA
AGGTGTATCCAGGTCCATGATGGTAATTGTGTTTACATTTTATGGTGCCTAGTACTGACA
GATGTTATATCCCTATATTAAACGGATGAATCCATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q68EF3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68EF3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-672, - strand, RNAz p=0.584364

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-672, - strand, RNAz p=0.584364

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-1056, gnl|bosTau2|chr9 (4639295-4640240)
               

               
               107-1056, gnl|Hg17|chr6 (71626618-71627589)
               

               
               107-1056, gnl|Mm7|chr1 (24056704-24055762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-1056, gnl|bosTau2|chr9 (4639295-4640240)
               

               
               107-1056, gnl|Hg17|chr6 (71626618-71627589)
               

               
               107-1056, gnl|Mm7|chr1 (24056704-24055762)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	107-1056, gnl\|bosTau2\|chr9 (4639295-4640240)
	107-1056, gnl\|Hg17\|chr6 (71626618-71627589)
	107-1056, gnl\|Mm7\|chr1 (24056704-24055762)

	fbs (0.350693)
	fhi (0.339155)
	thg (0.253582)
	cbe (0.239234)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	rec (0.17307)
	lun (0.150489)
	ski (0.146735)
	hyp (0.142837)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)