Non-Coding RNA Search

Ss1.1-rgul0124_m21.5

Sequence:


               
               AGAAGTGGAGGCTGGCCTGCTGACACCACCTCCCTCTGCTGGGCCTGCAAAGGGCCCAGA
GAGCTCCTTGCCACCTGCAGCCAGCCTGGATGGGGAAGGCTGGGCTCTTGGAGGTGTGCT
CAGAGCTCTCTACTTTGCCTGATTCCCAGGGATTCTATTTTAACAAATTGTTTTCTTAGT
TTTTAAGTACAGATGGCTGGTGAAGATTTTTCAGCCAGGTAGTGTTTTGTTTTTTACACT
GTGGATCATGGTTTGTGGGAGTTATGATTTGTAGGGAAAAGGAAAATAGACAATTACTTC
TTAGTAAAGAAGCAGCTTACCAAATGTGAGCCTGCTAGGAAAAACATGGAAGTCATTTAT
GACTGCTGTGTCATAGATTAGCTAAAGTACAAAAAGGTTGGTCATCCCCTCCAATTAAGG
ATAAACCTGCCACTGTGCATTTCAGTCGCAACGTATCTGCTGAGCAAAAGGAGGAAAACA
AAGAAGCAAAACCTCGTTCCCTTCGCTTTACCTGGAGCATGAAAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTGGAGGCTGGCCTGCTGACACCACCTCCCTCTGCTGGGCCTGCAAAGGGCCCAGA
GAGCTCCTTGCCACCTGCAGCCAGCCTGGATGGGGAAGGCTGGGCTCTTGGAGGTGTGCT
CAGAGCTCTCTACTTTGCCTGATTCCCAGGGATTCTATTTTAACAAATTGTTTTCTTAGT
TTTTAAGTACAGATGGCTGGTGAAGATTTTTCAGCCAGGTAGTGTTTTGTTTTTTACACT
GTGGATCATGGTTTGTGGGAGTTATGATTTGTAGGGAAAAGGAAAATAGACAATTACTTC
TTAGTAAAGAAGCAGCTTACCAAATGTGAGCCTGCTAGGAAAAACATGGAAGTCATTTAT
GACTGCTGTGTCATAGATTAGCTAAAGTACAAAAAGGTTGGTCATCCCCTCCAATTAAGG
ATAAACCTGCCACTGTGCATTTCAGTCGCAACGTATCTGCTGAGCAAAAGGAGGAAAACA
AAGAAGCAAAACCTCGTTCCCTTCGCTTTACCTGGAGCATGAAAACCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-315, + strand, RNAz p=0.884105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-315, + strand, RNAz p=0.884105

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-528, gnl|bosTau2|chr21 (48353734-48354235)
               

               
               1-528, gnl|Hg17|chr14 (103038599-103039054)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr21 (48353734-48354235)
               

               
               1-528, gnl|Hg17|chr14 (103038599-103039054)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               cki (0.165235)
               

               
               ski (0.146735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               ski (0.146735)

	1-528, gnl\|bosTau2\|chr21 (48353734-48354235)
	1-528, gnl\|Hg17\|chr14 (103038599-103039054)