Non-Coding RNA Search

Ss1.1-rgul0125_i9.5

Sequence:


               
               TAAGGATTTTGATAAGAAATACTGAATCTTGATGATTATCAAGCTGTTTGTATACAAATC
ACAGATCCAAAACATACTATGCTCAAGTCTGCCAATAGGCAGGCCTCTGAAACCCTCCAT
ATTTCAGATGATACAGGTCCCTGAAATTTGAAACAACTCACTCTGACGTTGAATTGGGTA
GTGTCACATTAAAAAAAAAAAAGTGTGAATGATCTGACTTGGCATGTAAGCACATAGAAG
ACTGAGGCTGCATCTTACTACTTCACTTTACTTGTAAGTGCCTAGCACAGTGCTAAGCCC
ATAGTAGGTGCTCACTATTTAGTTAAAAACTGTTAGGGCTGTAGCTTATTATAGCCTCAG
GGTGTGTGTTGTGTGTTATTATTAATGACTATGATATTTAGCTCTGAAAGTGAAACTCAT
CAATACAAAGTTATAGAAGTTAGTGCATAAATCTGTTTCATCCTCAGATTCATAGAGGCT
ATTCAAATTCTAGATGTATAATTTTATGGTCCCACTGTGAGTCTCTATATATGTAACAAG
ATTAAAAGCATAATACAAGTGTGAAATAGCTGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGATTTTGATAAGAAATACTGAATCTTGATGATTATCAAGCTGTTTGTATACAAATC
ACAGATCCAAAACATACTATGCTCAAGTCTGCCAATAGGCAGGCCTCTGAAACCCTCCAT
ATTTCAGATGATACAGGTCCCTGAAATTTGAAACAACTCACTCTGACGTTGAATTGGGTA
GTGTCACATTAAAAAAAAAAAAGTGTGAATGATCTGACTTGGCATGTAAGCACATAGAAG
ACTGAGGCTGCATCTTACTACTTCACTTTACTTGTAAGTGCCTAGCACAGTGCTAAGCCC
ATAGTAGGTGCTCACTATTTAGTTAAAAACTGTTAGGGCTGTAGCTTATTATAGCCTCAG
GGTGTGTGTTGTGTGTTATTATTAATGACTATGATATTTAGCTCTGAAAGTGAAACTCAT
CAATACAAAGTTATAGAAGTTAGTGCATAAATCTGTTTCATCCTCAGATTCATAGAGGCT
ATTCAAATTCTAGATGTATAATTTTATGGTCCCACTGTGAGTCTCTATATATGTAACAAG
ATTAAAAGCATAATACAAGTGTGAAATAGCTGATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-415, - strand, RNAz p=0.999492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-415, - strand, RNAz p=0.999492

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               16-472, gnl|bosTau2|chr18 (24488299-24488761)
               

               
               16-472, gnl|Hg17|chr10 (96081637-96082353)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-472, gnl|bosTau2|chr18 (24488299-24488761)
               

               
               16-472, gnl|Hg17|chr10 (96081637-96082353)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               gul (0.355177)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	16-472, gnl\|bosTau2\|chr18 (24488299-24488761)
	16-472, gnl\|Hg17\|chr10 (96081637-96082353)