Non-Coding RNA Search

Ss1.1-rgul0125_k20.5

Sequence:


               
               ATAAAATGAAGAGCTACAGAATACTGTGTTTATGCAAACATGACTTTGCACAAAATCTGT
TTATTGTTTTGTTTTATAAACAAAATTTCATTTTTGTTTTTTTCAGTAACAGTACTATAT
TTAGTGTATAAAGAGAAACAGTCAAGGGAATTAAGCTTATTTTATTTTAGCTGCTTTGCT
TGGAAGTCTTAATGGTCATGAATTCTTTACATTTTCCTTAACCAGTGAATAAAGAAGTTA
GTTTCAACTTACATAAAGGTAATGAGTAATGCCTTGCACCCACTTTGTTAAACACTTGGA
AGATTATAAAATTTGACATTCACTTTCAGAAGGGTAAGATCTTCAGTTGTTTGATGCTCT
AGTCACTTCCCACCCAATATACACTGTAGTGTTCTTTTTTTTGAAGGAAGACGGCAGATT
TCTCTTTTCATTGTTATTATTAAAGTATAGTTGACTTACAATGTTTCTTTAAGTTCTGTT
GTACATCAGAATGACCTAACCACACACATTTCCCTGTGCCATACAGTAGGGGAACATTGC
CCATCCATTCCAAATACAACAGTTTGCATCCCCAAAAAGCCCCAAAATGCCCAACCATCC
CACTCCCTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAATGAAGAGCTACAGAATACTGTGTTTATGCAAACATGACTTTGCACAAAATCTGT
TTATTGTTTTGTTTTATAAACAAAATTTCATTTTTGTTTTTTTCAGTAACAGTACTATAT
TTAGTGTATAAAGAGAAACAGTCAAGGGAATTAAGCTTATTTTATTTTAGCTGCTTTGCT
TGGAAGTCTTAATGGTCATGAATTCTTTACATTTTCCTTAACCAGTGAATAAAGAAGTTA
GTTTCAACTTACATAAAGGTAATGAGTAATGCCTTGCACCCACTTTGTTAAACACTTGGA
AGATTATAAAATTTGACATTCACTTTCAGAAGGGTAAGATCTTCAGTTGTTTGATGCTCT
AGTCACTTCCCACCCAATATACACTGTAGTGTTCTTTTTTTTGAAGGAAGACGGCAGATT
TCTCTTTTCATTGTTATTATTAAAGTATAGTTGACTTACAATGTTTCTTTAAGTTCTGTT
GTACATCAGAATGACCTAACCACACACATTTCCCTGTGCCATACAGTAGGGGAACATTGC
CCATCCATTCCAAATACAACAGTTTGCATCCCCAAAAAGCCCCAAAATGCCCAACCATCC
CACTCCCTCCCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               49-403, gnl|bosTau2|chr26 (3241834-3242187)
               

               
               49-403, gnl|canFam2|chr26 (36688990-36688711)
               

               
               49-403, gnl|dasNov1|scaffold_23131 (44421-44100)
               

               
               49-403, gnl|hg17|chr10 (56332959-56333283)
               

               
               49-403, gnl|Hg17|chr10 (56333561-56332959)
               

               
               49-403, gnl|loxAfr1|scaffold_6242 (46423-46742)
               

               
               49-403, gnl|mm7|chr10 (73311713-73311349)
               

               
               49-403, gnl|Mm7|chr10 (73311285-73311711)
               

               
               49-403, gnl|panTro1|chr8 (57261748-57262071)
               

               
               49-403, gnl|rheMac2|chr9 (82393240-82392914)
               

               
               49-403, gnl|rn3|chr20 (15493601-15493905)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-403, gnl|bosTau2|chr26 (3241834-3242187)
               

               
               49-403, gnl|canFam2|chr26 (36688990-36688711)
               

               
               49-403, gnl|dasNov1|scaffold_23131 (44421-44100)
               

               
               49-403, gnl|hg17|chr10 (56332959-56333283)
               

               
               49-403, gnl|Hg17|chr10 (56333561-56332959)
               

               
               49-403, gnl|loxAfr1|scaffold_6242 (46423-46742)
               

               
               49-403, gnl|mm7|chr10 (73311713-73311349)
               

               
               49-403, gnl|Mm7|chr10 (73311285-73311711)
               

               
               49-403, gnl|panTro1|chr8 (57261748-57262071)
               

               
               49-403, gnl|rheMac2|chr9 (82393240-82392914)
               

               
               49-403, gnl|rn3|chr20 (15493601-15493905)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               gul (0.355177)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)

	49-403, gnl\|bosTau2\|chr26 (3241834-3242187)
	49-403, gnl\|canFam2\|chr26 (36688990-36688711)
	49-403, gnl\|dasNov1\|scaffold_23131 (44421-44100)
	49-403, gnl\|hg17\|chr10 (56332959-56333283)
	49-403, gnl\|Hg17\|chr10 (56333561-56332959)
	49-403, gnl\|loxAfr1\|scaffold_6242 (46423-46742)
	49-403, gnl\|mm7\|chr10 (73311713-73311349)
	49-403, gnl\|Mm7\|chr10 (73311285-73311711)
	49-403, gnl\|panTro1\|chr8 (57261748-57262071)
	49-403, gnl\|rheMac2\|chr9 (82393240-82392914)
	49-403, gnl\|rn3\|chr20 (15493601-15493905)