Non-Coding RNA Search

Ss1.1-rgul0127_b20.5

Sequence:


               
               CTGGGAGCCGGAGCCAGCCCCGTAGTGTGTGGCCGTCAGTATGACGCAGAGAGGCGTGTG
AATGCAGCCGGCTGCTGCAGCTGGTGCACTTGACTCTGGGCAGCGTGTTCCCAGGAACCC
GCAGGACACCGAGGACAGAGAGTGATGTAACCCAGATCTGCCAGATGTGGGAGCCAGCGT
GAGTCACGCTGGACGATTCATTGAGAAATGTTTTCTGGGTCATCTGAGCAGGGAGCACTG
GCTGCTTCCCCTGCCATCTGGGGTTGGAGGCACCCAAGTCCACACACCAGGAATTCCCAA
GTTCACTAACATCTGTCTAAAATTACAGCCTGGTTCTCTGAGCTGACACAGTGCAGAGCC
CAGACTCTGTGATGGTCCCAGGCCTGTAATTTGTTCCCGGATTTTACCACTTTGGGTTGT
GGAGGGTGGGAGGTAATCAGTTAATAAAAACCTACATGGAAGTTGCTGTGAGGTTTCTAT
ACATTCTGTCAAGACCAGACATGGGATGGGAGGTTGCGAAAAGCCAACAGCGCTGTGGGC
ATTGTGGCCAATGAACTACCAGGAATTGTGGTCTTCTTTTCTGTTAGATGTGGGCAAGAT
GCCTCATGGTGAATAAGATACATGTATTTCTGAGAAGGTGTAAGCTGTCTTAAAAAAAAA
AAAAACCCTGGTGTATATATAACAAACAACCAGAAAAGTGCATGCATACATCACTATGTG
TAATCGCACCCCCAGGTAACTAGAGGGTTGAATGGTGGCTCCCAGACAGAGAGGTCCTTC
AGAACCTGGGAATGGGATCTTATTTGGAAAGGGGTTTTTTGATATTAAGGTTCTTGAGAC
CCTGAATTACCTGGGTGGTCCCTATATCCAATGACATGTCTCCTTCCAAGAGACAGAAGA
AAAGAAGAGGCCACGGAAGAGAAGGCCACACGAAGATAGAAACAGAGATTGAAGAGCTGT
GGACACAAGGAACAGCTCGAGCCGCCAGGAGCTGGAAGAGGCAAATGGGATTGTCCCCTA
GAGCCTTCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGAGCCGGAGCCAGCCCCGTAGTGTGTGGCCGTCAGTATGACGCAGAGAGGCGTGTG
AATGCAGCCGGCTGCTGCAGCTGGTGCACTTGACTCTGGGCAGCGTGTTCCCAGGAACCC
GCAGGACACCGAGGACAGAGAGTGATGTAACCCAGATCTGCCAGATGTGGGAGCCAGCGT
GAGTCACGCTGGACGATTCATTGAGAAATGTTTTCTGGGTCATCTGAGCAGGGAGCACTG
GCTGCTTCCCCTGCCATCTGGGGTTGGAGGCACCCAAGTCCACACACCAGGAATTCCCAA
GTTCACTAACATCTGTCTAAAATTACAGCCTGGTTCTCTGAGCTGACACAGTGCAGAGCC
CAGACTCTGTGATGGTCCCAGGCCTGTAATTTGTTCCCGGATTTTACCACTTTGGGTTGT
GGAGGGTGGGAGGTAATCAGTTAATAAAAACCTACATGGAAGTTGCTGTGAGGTTTCTAT
ACATTCTGTCAAGACCAGACATGGGATGGGAGGTTGCGAAAAGCCAACAGCGCTGTGGGC
ATTGTGGCCAATGAACTACCAGGAATTGTGGTCTTCTTTTCTGTTAGATGTGGGCAAGAT
GCCTCATGGTGAATAAGATACATGTATTTCTGAGAAGGTGTAAGCTGTCTTAAAAAAAAA
AAAAACCCTGGTGTATATATAACAAACAACCAGAAAAGTGCATGCATACATCACTATGTG
TAATCGCACCCCCAGGTAACTAGAGGGTTGAATGGTGGCTCCCAGACAGAGAGGTCCTTC
AGAACCTGGGAATGGGATCTTATTTGGAAAGGGGTTTTTTGATATTAAGGTTCTTGAGAC
CCTGAATTACCTGGGTGGTCCCTATATCCAATGACATGTCTCCTTCCAAGAGACAGAAGA
AAAGAAGAGGCCACGGAAGAGAAGGCCACACGAAGATAGAAACAGAGATTGAAGAGCTGT
GGACACAAGGAACAGCTCGAGCCGCCAGGAGCTGGAAGAGGCAAATGGGATTGTCCCCTA
GAGCCTTCAGAG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               122-238, - strand, RNAz p=0.537494
               

               
               319-426, + strand, RNAz p=0.531481
               

               
               499-594, - strand, RNAz p=0.932789
               

               
               855-971, - strand, RNAz p=0.969911

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-238, - strand, RNAz p=0.537494
               

               
               319-426, + strand, RNAz p=0.531481
               

               
               499-594, - strand, RNAz p=0.932789
               

               
               855-971, - strand, RNAz p=0.969911

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-1032, gnl|bosTau2|chr19 (43449743-43448725)
               

               
               3-1032, gnl|Hg17|chr17 (62917734-62919059)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1032, gnl|bosTau2|chr19 (43449743-43448725)
               

               
               3-1032, gnl|Hg17|chr17 (62917734-62919059)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.355177)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)

	122-238, - strand, RNAz p=0.537494
	319-426, + strand, RNAz p=0.531481
	499-594, - strand, RNAz p=0.932789
	855-971, - strand, RNAz p=0.969911

	3-1032, gnl\|bosTau2\|chr19 (43449743-43448725)
	3-1032, gnl\|Hg17\|chr17 (62917734-62919059)