Non-Coding RNA Search

Ss1.1-rgul0127_k16.5

Sequence:


               
               CTATCAATGGAAGAAAAGTTGTATGAATCAGGTTACTGTATCAACAACTGATAGAAGAAA
CAATAAACTGATTTTCAAAGTGAATTTGGTAGAAATGGATGAGAAGATTTTGGTTGACTT
CCGGCTTTCTAAGGGTGATGGATTGGAATTCAAGAGACACTTCCTGAAGATTAAAGGGAA
GCTAAGTGATGTTGTAAGCAGCCAGAAGGTTTCGCTTCCAGCCACATGATAGATCTGCTG
GCTCTGGGATTCCTGGTGAATATAGTGCTGCTATGTGGACATTATTCTTCCTAGAGAAGA
TTATCTTATTCTGCAAACTGCAAACAATAGTCCCCAAAGAATTGTCTTCCCTCTAGCCAA
ACATTTTCCAATTCTTTTTGTATGTTCTTCATGCAAATAATACCTATATCTTAATTGTAA
GTACAACTTTGGGCAAAGGGTGGATAGAATTCATTAGCTATTTCTTCATCTGCGTTTAGT
GTCTGAATTTGAGACCCACGTGGTGGAAACCAAGTTTTGGGGATACATGAGTTTACCAAC
TTTTATACCAATATAATGAAAGATGATACTTCTGTCCCATTTTTACCAAAACATTTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATCAATGGAAGAAAAGTTGTATGAATCAGGTTACTGTATCAACAACTGATAGAAGAAA
CAATAAACTGATTTTCAAAGTGAATTTGGTAGAAATGGATGAGAAGATTTTGGTTGACTT
CCGGCTTTCTAAGGGTGATGGATTGGAATTCAAGAGACACTTCCTGAAGATTAAAGGGAA
GCTAAGTGATGTTGTAAGCAGCCAGAAGGTTTCGCTTCCAGCCACATGATAGATCTGCTG
GCTCTGGGATTCCTGGTGAATATAGTGCTGCTATGTGGACATTATTCTTCCTAGAGAAGA
TTATCTTATTCTGCAAACTGCAAACAATAGTCCCCAAAGAATTGTCTTCCCTCTAGCCAA
ACATTTTCCAATTCTTTTTGTATGTTCTTCATGCAAATAATACCTATATCTTAATTGTAA
GTACAACTTTGGGCAAAGGGTGGATAGAATTCATTAGCTATTTCTTCATCTGCGTTTAGT
GTCTGAATTTGAGACCCACGTGGTGGAAACCAAGTTTTGGGGATACATGAGTTTACCAAC
TTTTATACCAATATAATGAAAGATGATACTTCTGTCCCATTTTTACCAAAACATTTGGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               290-406, - strand, RNAz p=0.567369

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-406, - strand, RNAz p=0.567369

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               132-600, gnl|bosTau2|chr29 (22439396-22438930)
               

               
               132-600, gnl|Hg17|chr11 (125030328-125030780)
               

               
               132-600, gnl|Mm7|chr9 (36636840-36636383)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-600, gnl|bosTau2|chr29 (22439396-22438930)
               

               
               132-600, gnl|Hg17|chr11 (125030328-125030780)
               

               
               132-600, gnl|Mm7|chr9 (36636840-36636383)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbr (1.15178)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.15178)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               ova (0.129132)

	132-600, gnl\|bosTau2\|chr29 (22439396-22438930)
	132-600, gnl\|Hg17\|chr11 (125030328-125030780)
	132-600, gnl\|Mm7\|chr9 (36636840-36636383)

	cbr (1.15178)
	gul (0.177588)
	tbr (0.154178)
	pty (0.142714)
	ova (0.129132)