Non-Coding RNA Search

Ss1.1-rgul0129_h23.5

Sequence:


               
               CCCCAAATTATTTTTGAAAAGACAGGATTTAACAAAAAGATTTTTAACAATAAGGAATCT
GAAGCACAGGAAGAGACACAGAGCCAACAGAATGAAAATCACTGTTTTATATCACCACCA
TATCTGCCTTTTCCTTCTTGCTTAATAAGCATTCAGACTCCTTTTATATTTGTTTTATAA
AAGCACATGTACGTATGTAATGTAGCAATCTGGTTCAAAAAAAGCACAGCAGTCTTACTT
TGGCTCTGTCTTAGAACATCACCTTAAATGGCCTCTGGTAAATAAACCTAAAAAAGCACA
ATTATTATTAAAACAGATCCAATGTTAGCGTATTTCTATTCTGAATAACAACAAAGAATG
ATCATCAGAGGGATAAGAAAAGTTTTTTGTTGGGTGTTGCAGAAGACTGATTTTACACAG
TGTTTAAGTTAGGCAAGTGCCAATTTCAAAGAATAAATTTACAGTGAAGAAATAGTGCTC
ATAAATTGATATAGTGGACTTCCTGTCACATTCTTTTCCTGCTGTTTTTTATTGTTCACA
ATAAACATTTTGTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAAATTATTTTTGAAAAGACAGGATTTAACAAAAAGATTTTTAACAATAAGGAATCT
GAAGCACAGGAAGAGACACAGAGCCAACAGAATGAAAATCACTGTTTTATATCACCACCA
TATCTGCCTTTTCCTTCTTGCTTAATAAGCATTCAGACTCCTTTTATATTTGTTTTATAA
AAGCACATGTACGTATGTAATGTAGCAATCTGGTTCAAAAAAAGCACAGCAGTCTTACTT
TGGCTCTGTCTTAGAACATCACCTTAAATGGCCTCTGGTAAATAAACCTAAAAAAGCACA
ATTATTATTAAAACAGATCCAATGTTAGCGTATTTCTATTCTGAATAACAACAAAGAATG
ATCATCAGAGGGATAAGAAAAGTTTTTTGTTGGGTGTTGCAGAAGACTGATTTTACACAG
TGTTTAAGTTAGGCAAGTGCCAATTTCAAAGAATAAATTTACAGTGAAGAAATAGTGCTC
ATAAATTGATATAGTGGACTTCCTGTCACATTCTTTTCCTGCTGTTTTTTATTGTTCACA
ATAAACATTTTGTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-142, - strand, RNAz p=0.833999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-142, - strand, RNAz p=0.833999

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-572, gnl|bosTau2|chr6 (32405783-32406395)
               

               
               1-572, gnl|Hg17|chr4 (17522569-17521996)
               

               
               1-572, gnl|Mm7|chr5 (45022967-45022408)
               


               
               2-331, gnl|bosTau2|chr4 (16995451-16995091)
               

               
               2-331, gnl|Hg17|chr4 (17522566-17522253)
               

               
               2-331, gnl|Mm7|chr5 (45022966-45022647)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-572, gnl|bosTau2|chr6 (32405783-32406395)
               

               
               1-572, gnl|Hg17|chr4 (17522569-17521996)
               

               
               1-572, gnl|Mm7|chr5 (45022967-45022408)
               


               
               2-331, gnl|bosTau2|chr4 (16995451-16995091)
               

               
               2-331, gnl|Hg17|chr4 (17522566-17522253)
               

               
               2-331, gnl|Mm7|chr5 (45022966-45022647)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

	1-572, gnl\|bosTau2\|chr6 (32405783-32406395)
	1-572, gnl\|Hg17\|chr4 (17522569-17521996)
	1-572, gnl\|Mm7\|chr5 (45022967-45022408)

	2-331, gnl\|bosTau2\|chr4 (16995451-16995091)
	2-331, gnl\|Hg17\|chr4 (17522566-17522253)
	2-331, gnl\|Mm7\|chr5 (45022966-45022647)