Non-Coding RNA Search

Ss1.1-rhea02_b17.5

Sequence:


               
               AATGAGGAGCTTCCCAAACCTCGAATTAGTGATTCAGAAAGTGAGGAGCTTCCCAAACCT
CGGATCAGTGACTCAGAGAGTGAGGAGCCTCAGAGGACTCAGGCCAGTGACTCTGAAAAT
GAGGAGCTTCCCAAACCCCGTATCAGTGACTCGGAAAGTGAGGACCCGCCGAGGCACCAA
GCCAGTGACTCTGAAAACGAGGAGCTTCCCAAACCCCGTATCACTGACTCAGAAAGTGAG
GATCCCCCAAGGCACCAAGCCAGTGACTCGGAAAATGAGGAGCTCCCCAAGCCCCGTATT
AGTGATTCCGAAAGTGAGGACCCCCCAAGGAACCAGGCCAGTGATTCGGAAAATGAGGAG
CTTCCCAAACCCCGAGTCAGTGACTCTGAGAGTGAGGAACCTCAGAAGGGACCTGCCAGT
GATTCGGAAACTGAGGATGCCTCCAGACACAAACAGAAGCCAGAGTCTGATGAGGACAGT
GATGGGGAGAATAAGGGAGAGAATACAGAAATGAAAAATGACTCCTTTCATTCAGATACC
CATGCAGACAGGAAACGGTTCAACAGTTCTGATAGCGAGGAGGAAGAACCCAAAAGGCCC
AAAATTGACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAGGAGCTTCCCAAACCTCGAATTAGTGATTCAGAAAGTGAGGAGCTTCCCAAACCT
CGGATCAGTGACTCAGAGAGTGAGGAGCCTCAGAGGACTCAGGCCAGTGACTCTGAAAAT
GAGGAGCTTCCCAAACCCCGTATCAGTGACTCGGAAAGTGAGGACCCGCCGAGGCACCAA
GCCAGTGACTCTGAAAACGAGGAGCTTCCCAAACCCCGTATCACTGACTCAGAAAGTGAG
GATCCCCCAAGGCACCAAGCCAGTGACTCGGAAAATGAGGAGCTCCCCAAGCCCCGTATT
AGTGATTCCGAAAGTGAGGACCCCCCAAGGAACCAGGCCAGTGATTCGGAAAATGAGGAG
CTTCCCAAACCCCGAGTCAGTGACTCTGAGAGTGAGGAACCTCAGAAGGGACCTGCCAGT
GATTCGGAAACTGAGGATGCCTCCAGACACAAACAGAAGCCAGAGTCTGATGAGGACAGT
GATGGGGAGAATAAGGGAGAGAATACAGAAATGAAAAATGACTCCTTTCATTCAGATACC
CATGCAGACAGGAAACGGTTCAACAGTTCTGATAGCGAGGAGGAAGAACCCAAAAGGCCC
AAAATTGACAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40806973|gb|AAH65279.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40806973|gb|AAH65279.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-479, - strand, RNAz p=0.972989

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-479, - strand, RNAz p=0.972989

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr2 (3799670-3800281)
               

               
               1-612, gnl|Hg17|chr2 (127979111-127978578)
               

               
               1-612, gnl|Mm7|chr18 (32472055-32472561)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr2 (3799670-3800281)
               

               
               1-612, gnl|Hg17|chr2 (127979111-127978578)
               

               
               1-612, gnl|Mm7|chr18 (32472055-32472561)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hea (0.204499)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	1-612, gnl\|bosTau2\|chr2 (3799670-3800281)
	1-612, gnl\|Hg17\|chr2 (127979111-127978578)
	1-612, gnl\|Mm7\|chr18 (32472055-32472561)