Non-Coding RNA Search

Ss1.1-rhea02_c20.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAATTCACCTTGTTTTATT------------------------
------------------------------------------------------------
GAGAGCAGCGCGCGTGGGAATAGACAGCCGGCGCTCCACGAAAGACACTGCCTACATCGT
ATTTCCGACGGTTCTGCGGGCGTTCACCACGCGGCAGCCCGGACGGCGAGTTCTCCCGGA
TCGCGGCGGGAAGCGCAGACCTCCGGAGTCCCGGAAGGGCGCACACCCAGCCCCCGGCCA
TGGCTCCGGGACCCCATCTTCCTCGTCGTCTTGAGTGTCGTGCTGTGGTTCCTTAAAAAT
GGACGACATATGAATAAAGAAAATAGGTCTGAAAGGAAAGGTGAGGATTTCAAAGAGTAG
ATCTCTTCATTCTTCAAACTGCTGACCCCATGAGGACAGGCACCGCACCTTCCTGCTTGG
CCTCTGTTCCTGGAGGGGAGCACATTCGGGCCTTTCACTTGGAGAAGCTACTGGTCAGGC
CTATCTCCTCCTCTTCCTGCGGTAGTGCTTCAATGGGAATCACGTTGGGCGGGGTGTCCA
GGCTCTGGAGAGACAGAAGCTCTGATTCGTTAACCACTGAGCCACGACCGGAACTCCCAA
AGGTCTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAATTCACCTTGTTTTATT------------------------
------------------------------------------------------------
GAGAGCAGCGCGCGTGGGAATAGACAGCCGGCGCTCCACGAAAGACACTGCCTACATCGT
ATTTCCGACGGTTCTGCGGGCGTTCACCACGCGGCAGCCCGGACGGCGAGTTCTCCCGGA
TCGCGGCGGGAAGCGCAGACCTCCGGAGTCCCGGAAGGGCGCACACCCAGCCCCCGGCCA
TGGCTCCGGGACCCCATCTTCCTCGTCGTCTTGAGTGTCGTGCTGTGGTTCCTTAAAAAT
GGACGACATATGAATAAAGAAAATAGGTCTGAAAGGAAAGGTGAGGATTTCAAAGAGTAG
ATCTCTTCATTCTTCAAACTGCTGACCCCATGAGGACAGGCACCGCACCTTCCTGCTTGG
CCTCTGTTCCTGGAGGGGAGCACATTCGGGCCTTTCACTTGGAGAAGCTACTGGTCAGGC
CTATCTCCTCCTCTTCCTGCGGTAGTGCTTCAATGGGAATCACGTTGGGCGGGGTGTCCA
GGCTCTGGAGAGACAGAAGCTCTGATTCGTTAACCACTGAGCCACGACCGGAACTCCCAA
AGGTCTTTTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               264-541, gnl|bosTau2|chr3 (75284766-75284481)
               

               
               264-541, gnl|Hg17|chr1 (37949729-37950011)
               

               
               264-541, gnl|Mm7|chr4 (124289383-124289106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-541, gnl|bosTau2|chr3 (75284766-75284481)
               

               
               264-541, gnl|Hg17|chr1 (37949729-37950011)
               

               
               264-541, gnl|Mm7|chr4 (124289383-124289106)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)

	264-541, gnl\|bosTau2\|chr3 (75284766-75284481)
	264-541, gnl\|Hg17\|chr1 (37949729-37950011)
	264-541, gnl\|Mm7\|chr4 (124289383-124289106)