Ss1.1-rhea02_k19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTACTCCCTCACGTGTTGCTAAAGGAGTTGTTGAACACACCAAAATGAGTCTGCATGGT GCTAGTGGGGGACATGAGAGGTCAAGAGATAGACGGAGGTCAAGTGACAGATCACGAGAC TCATCTCATGAAAGAACAGAATCCCAGCTCACTCCTTGTATTAGAAATGTTACTTCTCCA ACACGACAGCACCATATTGAACGTGAAAAAGATCACAGTTCCTCTCGTCCAAGCAGTCCT CGTCCTCAAAAAGCATCTCCAAATGGTTCCAGCAGCAGTGCTGGGAACAGCAGCAGAAAC AGTAGTCAGTCCAGTTCAGATGGTAACTGTAAGACATCTGGGGAAATGGTGTTTGTTTAT GAAAATGCAAAAGAAGGAGCTCGGAATGTAAGAACATCAGAGCGAGTGACGCTAATAGTG GATAACACTAGATTTGTTGTGGACCCATCCATTTTTACTGCACAACCAAATACAATGCTG GGCAGGATGTTTGGATCTGGCAGAGAACATAACTTTACACGTCCCAATGAGAAGGGAGAG TATGAAGTGGCGGAGGGGATTGGTTCTACTGTGTTTCGAGCTATTCTGGATTACTATAAA ACAGGAATAATCCGTTGTCCTGATGGCATATCTATTCCCGAACTAAGAGAAGCATGTGAC TATCTTTGTATCTCTTTTGAATATAGTACTATTAAATGTAGAGATCTCAGTGCCCTAATG CATGAGTTATCAAACGATGGTGCTCGTAGACAGTTTGAATTTTATCTGGAAGAAATGATC CTGCCTCTCATGGTAGCTAGTGCCCAAAGTGGGGAACGTGAATGTCACATAGTGGTGCTT ACAGATGATGATGTGGTTGATTGGGATGAAGAATATCCACCACAGATGGGAGAAGAATAT TCACAAATTATTTATAGCACAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTACTCCCTCACGTGTTGCTAAAGGAGTTGTTGAACACACCAAAATGAGTCTGCATGGT GCTAGTGGGGGACATGAGAGGTCAAGAGATAGACGGAGGTCAAGTGACAGATCACGAGAC TCATCTCATGAAAGAACAGAATCCCAGCTCACTCCTTGTATTAGAAATGTTACTTCTCCA ACACGACAGCACCATATTGAACGTGAAAAAGATCACAGTTCCTCTCGTCCAAGCAGTCCT CGTCCTCAAAAAGCATCTCCAAATGGTTCCAGCAGCAGTGCTGGGAACAGCAGCAGAAAC AGTAGTCAGTCCAGTTCAGATGGTAACTGTAAGACATCTGGGGAAATGGTGTTTGTTTAT GAAAATGCAAAAGAAGGAGCTCGGAATGTAAGAACATCAGAGCGAGTGACGCTAATAGTG GATAACACTAGATTTGTTGTGGACCCATCCATTTTTACTGCACAACCAAATACAATGCTG GGCAGGATGTTTGGATCTGGCAGAGAACATAACTTTACACGTCCCAATGAGAAGGGAGAG TATGAAGTGGCGGAGGGGATTGGTTCTACTGTGTTTCGAGCTATTCTGGATTACTATAAA ACAGGAATAATCCGTTGTCCTGATGGCATATCTATTCCCGAACTAAGAGAAGCATGTGAC TATCTTTGTATCTCTTTTGAATATAGTACTATTAAATGTAGAGATCTCAGTGCCCTAATG CATGAGTTATCAAACGATGGTGCTCGTAGACAGTTTGAATTTTATCTGGAAGAAATGATC CTGCCTCTCATGGTAGCTAGTGCCCAAAGTGGGGAACGTGAATGTCACATAGTGGTGCTT ACAGATGATGATGTGGTTGATTGGGATGAAGAATATCCACCACAGATGGGAGAAGAATAT TCACAAATTATTTATAGCACAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 199-486, gnl|bosTau2|chr15 (23318635-23318922) | |
| 199-486, gnl|Hg17|chr11 (13397869-13397582) | |
| 199-486, gnl|Mm7|chr7 (109248923-109248636) | |
| 704-911, gnl|bosTau2|chr15 (23334451-23334659) | |
| 704-911, gnl|canFam2|chr21 (39522234-39522023) | |
| 704-911, gnl|danRer3|chr7 (54733878-54734089) | |
| 704-911, gnl|dasNov1|scaffold_1106 (296-500) | |
| 704-911, gnl|echTel1|scaffold_324970 (16311-16517) | |
| 704-911, gnl|fr1|chrUn (36938732-36938518) | |
| 704-911, gnl|galGal2|chr5 (5078585-5078784) | |
| 704-911, gnl|Hg17|chr11 (13383986-13383778) | |
| 704-911, gnl|hg17|chr12 (51429535-51429744) | |
| 704-911, gnl|loxAfr1|scaffold_4055 (3611-3821) | |
| 704-911, gnl|Mm7|chr7 (109242007-109241799) | |
| 704-911, gnl|mm7|chrX (162551325-162551513) | |
| 704-911, gnl|monDom2|scaffold_10 (64165727-64165523) | |
| 704-911, gnl|oryCun1|scaffold_178016 (66661-66461) | |
| 704-911, gnl|panTro1|chr10 (52653171-52653380) | |
| 704-911, gnl|rheMac2|chr14 (58489581-58489777) | |
| 704-911, gnl|rn3|chrX (134153209-134153397) | |
| 704-911, gnl|tetNig1|chr5 (6196824-6196584) | |
| 704-911, gnl|xenTro1|scaffold_37 (2753789-2753991) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-486, gnl|bosTau2|chr15 (23318635-23318922) | |
| 199-486, gnl|Hg17|chr11 (13397869-13397582) | |
| 199-486, gnl|Mm7|chr7 (109248923-109248636) | |
| 704-911, gnl|bosTau2|chr15 (23334451-23334659) | |
| 704-911, gnl|canFam2|chr21 (39522234-39522023) | |
| 704-911, gnl|danRer3|chr7 (54733878-54734089) | |
| 704-911, gnl|dasNov1|scaffold_1106 (296-500) | |
| 704-911, gnl|echTel1|scaffold_324970 (16311-16517) | |
| 704-911, gnl|fr1|chrUn (36938732-36938518) | |
| 704-911, gnl|galGal2|chr5 (5078585-5078784) | |
| 704-911, gnl|Hg17|chr11 (13383986-13383778) | |
| 704-911, gnl|hg17|chr12 (51429535-51429744) | |
| 704-911, gnl|loxAfr1|scaffold_4055 (3611-3821) | |
| 704-911, gnl|Mm7|chr7 (109242007-109241799) | |
| 704-911, gnl|mm7|chrX (162551325-162551513) | |
| 704-911, gnl|monDom2|scaffold_10 (64165727-64165523) | |
| 704-911, gnl|oryCun1|scaffold_178016 (66661-66461) | |
| 704-911, gnl|panTro1|chr10 (52653171-52653380) | |
| 704-911, gnl|rheMac2|chr14 (58489581-58489777) | |
| 704-911, gnl|rn3|chrX (134153209-134153397) | |
| 704-911, gnl|tetNig1|chr5 (6196824-6196584) | |
| 704-911, gnl|xenTro1|scaffold_37 (2753789-2753991) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| hea (0.204499) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| hea (0.204499) | |
| cty (0.10408) | |
| ldo (0.0970026) |