Non-Coding RNA Search

Ss1.1-rhea05_p8.5

Sequence:


               
               CTGGAGGAAAAAAAGGGTCAAATAGCATGAAAATGTCATCTTCCTAAATATGTTAAATGG
TAAATGAGCTATGACAGTCATTATTCCCATCCAGCTTCTGCACTACTAAAAATTGTTTAA
ATTAATGAATACATATGAAATACTTAATAACATAGCTGAAAATGTGTGTGAAATGAGTAA
CCCAAGTAGGACATTCCTACGTTTATCTAGAACTACTTTTCTGCAACACAAACCTTGTAA
AATGCATATATAAATCACGGTAACTTTTAACTGTCCATGTCCCCTGTAGAGAATTATAAT
GATGAGCAATAGACCTGCAAATAATGAGAACTGATGTAAAAATCAGTCAAGAGCATTTTG
AATATGACTTTAGAGCATGTGTATGCTTTCAGATGGAATGCTGTTCTCTTGAAGTTATGG
CTGAGCTGTTATTAAACTGGTCTACTCAAGTCACAGAAAACATAGGTCATGCCTTATCTG
TGGGGGAGAGCCTTCCCAGAAGTTACCTGTGGTTACCTGTGCTGTGCTGTATATTCCTTT
TTAGTGGCCTCACTTTAGAAAATGAAGAAAGGTCACATTCTTCTGAAACTCCCTGCAGTC
TTCCATCTACCACAAGACCATGGACATGGAGGTCTTTCCAAATAGATGTAACCAGGCTCA
AGGGTTCAAGTAAAACCTGACACCTTCCATGCCGCCGAAAGAGTGTGGAGGAAATGTAGC
ACAAGGCATGTGTACGGTGGTGAATTCCCAGGCACTTGAAAGGGACAGAAAACCTAATCC
CTACAACTGTTAGCCTTCTTGGAGATTATGCAGCCCACAAGTATATTAAAAAAAGAAAAG
AAAGACATAGCCCTGCCCTACCCATTAGTGACTTGGGTGGGCAGAGGAAGTGATGGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGGAAAAAAAGGGTCAAATAGCATGAAAATGTCATCTTCCTAAATATGTTAAATGG
TAAATGAGCTATGACAGTCATTATTCCCATCCAGCTTCTGCACTACTAAAAATTGTTTAA
ATTAATGAATACATATGAAATACTTAATAACATAGCTGAAAATGTGTGTGAAATGAGTAA
CCCAAGTAGGACATTCCTACGTTTATCTAGAACTACTTTTCTGCAACACAAACCTTGTAA
AATGCATATATAAATCACGGTAACTTTTAACTGTCCATGTCCCCTGTAGAGAATTATAAT
GATGAGCAATAGACCTGCAAATAATGAGAACTGATGTAAAAATCAGTCAAGAGCATTTTG
AATATGACTTTAGAGCATGTGTATGCTTTCAGATGGAATGCTGTTCTCTTGAAGTTATGG
CTGAGCTGTTATTAAACTGGTCTACTCAAGTCACAGAAAACATAGGTCATGCCTTATCTG
TGGGGGAGAGCCTTCCCAGAAGTTACCTGTGGTTACCTGTGCTGTGCTGTATATTCCTTT
TTAGTGGCCTCACTTTAGAAAATGAAGAAAGGTCACATTCTTCTGAAACTCCCTGCAGTC
TTCCATCTACCACAAGACCATGGACATGGAGGTCTTTCCAAATAGATGTAACCAGGCTCA
AGGGTTCAAGTAAAACCTGACACCTTCCATGCCGCCGAAAGAGTGTGGAGGAAATGTAGC
ACAAGGCATGTGTACGGTGGTGAATTCCCAGGCACTTGAAAGGGACAGAAAACCTAATCC
CTACAACTGTTAGCCTTCTTGGAGATTATGCAGCCCACAAGTATATTAAAAAAAGAAAAG
AAAGACATAGCCCTGCCCTACCCATTAGTGACTTGGGTGGGCAGAGGAAGTGATGGCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               802-900, - strand, RNAz p=0.980607

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               802-900, - strand, RNAz p=0.980607

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               857-920, - strand, RNAmicro p=0.927369

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               857-920, - strand, RNAmicro p=0.927369

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr1 (79675011-79674102)
               

               
               1-900, gnl|Hg17|chr3 (142647880-142648772)
               

               
               1-900, gnl|Mm7|chr9 (96326676-96325828)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr1 (79675011-79674102)
               

               
               1-900, gnl|Hg17|chr3 (142647880-142648772)
               

               
               1-900, gnl|Mm7|chr9 (96326676-96325828)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ldo (0.291008)
               

               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               csk (0.140746)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.291008)
               

               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               csk (0.140746)

	1-900, gnl\|bosTau2\|chr1 (79675011-79674102)
	1-900, gnl\|Hg17\|chr3 (142647880-142648772)
	1-900, gnl\|Mm7\|chr9 (96326676-96325828)