Non-Coding RNA Search

Ss1.1-rhea08_o23.5

Sequence:


               
               CTACCCCAGACTTCTTCAAGTCTTGTACGCATGGAATGTAATTCCAAGAGCTATGTACAT
ACTCATTTTATTTTGGTTATTATGGTACGGAATCTGAAATTCTGGCCGCCAACTTAAGGC
AGAGTGGGCATATGGAGGAGACTGGGGGCGAACTAGTAAGAACTCAGTTGTTCCTTTGGT
TTCCCAGGATGCTCAGGGCACTGAGGGTGGGTCCTGATGACTCGGGCTTCCTTTGGGGCT
GTCGCCTCCCCACAATGTTCCAGGACTGTTTCTGCATAGAGAAACTTAGGTCCAACCTGT
TCACACTGCACCCCTGGTATCAATTCATTCATTCAACAAAGTTTTATTGTGCTGTTACTA
TGACTCAGGCTCAGTGTTCCCAGTTTCAGTTCTTTACAGCAACGTGTGAGCCAGAGGGGG
AACCAGAGTTACAAGGAGTCGGAGCATCTGGACCCCTGCTAACCAACTCCCTCTGTTGCT
CTGACAGTGTTTCTCGAGGGTTTTCTATTTTTGACCCCAGCAGAATTACCAACCTAGAGA
GATCTGCCCTGGGTTATCCTGGTTATGAGATGAAAAATGAGTATAAAAGCACTTGGCATT
ATGTGAGCTTCTTCTCCACTCTCTCCCCAGCCACCAGCCACCCACGCAGCTTTTTTAGCA
TTTAGTATTTAGTTAACAGGTAGTGAGAGAATGATGAAGCATGGTTTTTAATGTCAAGGC
TGGGAAGGCTTTTCTTCGTTCTTTTGCTTTTGCAAGATTGCATTTATGAAATTTGAATAC
TTGAAGATGTTGTATGTGAATAGTTTGGGGGGACCCTGGGAGATAATTCCTGGGAAGAAC
TATTAAAATTGCGCTCAGTTATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCCCAGACTTCTTCAAGTCTTGTACGCATGGAATGTAATTCCAAGAGCTATGTACAT
ACTCATTTTATTTTGGTTATTATGGTACGGAATCTGAAATTCTGGCCGCCAACTTAAGGC
AGAGTGGGCATATGGAGGAGACTGGGGGCGAACTAGTAAGAACTCAGTTGTTCCTTTGGT
TTCCCAGGATGCTCAGGGCACTGAGGGTGGGTCCTGATGACTCGGGCTTCCTTTGGGGCT
GTCGCCTCCCCACAATGTTCCAGGACTGTTTCTGCATAGAGAAACTTAGGTCCAACCTGT
TCACACTGCACCCCTGGTATCAATTCATTCATTCAACAAAGTTTTATTGTGCTGTTACTA
TGACTCAGGCTCAGTGTTCCCAGTTTCAGTTCTTTACAGCAACGTGTGAGCCAGAGGGGG
AACCAGAGTTACAAGGAGTCGGAGCATCTGGACCCCTGCTAACCAACTCCCTCTGTTGCT
CTGACAGTGTTTCTCGAGGGTTTTCTATTTTTGACCCCAGCAGAATTACCAACCTAGAGA
GATCTGCCCTGGGTTATCCTGGTTATGAGATGAAAAATGAGTATAAAAGCACTTGGCATT
ATGTGAGCTTCTTCTCCACTCTCTCCCCAGCCACCAGCCACCCACGCAGCTTTTTTAGCA
TTTAGTATTTAGTTAACAGGTAGTGAGAGAATGATGAAGCATGGTTTTTAATGTCAAGGC
TGGGAAGGCTTTTCTTCGTTCTTTTGCTTTTGCAAGATTGCATTTATGAAATTTGAATAC
TTGAAGATGTTGTATGTGAATAGTTTGGGGGGACCCTGGGAGATAATTCCTGGGAAGAAC
TATTAAAATTGCGCTCAGTTATTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-867, gnl|bosTau2|chrX (34349739-34348878)
               

               
               1-867, gnl|Hg17|chrX (37427972-37428918)
               

               
               1-867, gnl|Mm7|chrX (7869799-7868645)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-867, gnl|bosTau2|chrX (34349739-34348878)
               

               
               1-867, gnl|Hg17|chrX (37427972-37428918)
               

               
               1-867, gnl|Mm7|chrX (7869799-7868645)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               jca (0.11396)

	1-867, gnl\|bosTau2\|chrX (34349739-34348878)
	1-867, gnl\|Hg17\|chrX (37427972-37428918)
	1-867, gnl\|Mm7\|chrX (7869799-7868645)

	cmu (0.372787)
	cte (0.29274)
	cga (0.279096)
	hea (0.204499)
	sto (0.179824)
	rec (0.17307)
	cki (0.165235)
	csp (0.161186)
	liv (0.146284)
	cst (0.140036)
	che (0.136314)
	jca (0.11396)