Non-Coding RNA Search

Ss1.1-rhea09_g10.5

Sequence:


               
               TTTCAAAAGGCCCACAGTGACTTCTGCTGGGCATTTTCCACGATGTTTACAGACTGTGAG
TACAGCAGAATCTTTTACTGTGTGTATATAAATATATATATAAACAACTGTACATTTCTT
TTAGCCAGTTTTTCTGTGATTGTCTCTGTGTTGGTGCGTGTGGTATATGCATGCTGTGGC
TGGTGTGTGTGGACTTAAAAGTGACCTGATATTTCCGCCCTGTAGTTGTGCCAAAGCACA
CACCCTAAGTGGAATCTAAGTGCTGGTTCCTGACGACCACCGGCCTCAGTCAGTTTTACT
CTGTCTCTGTTAATAAATTTTGTGACCATGTTACCAGTACAAACGGCATATTGGAGGCAG
CACAGAAAGGGACAAGCAATGGGTTGGCAACGGGGTTTTGTTTGGTTGGTTTGTTGGCTG
GCTGGTTTGAAAAAAGCAGTATTTGGTGTTGTGTTTTTCCCTGTGCCGGAGCAAAAGTCA
TTAAAGTTGGAGGTCTTATCTTGTCCCAGTCCTCAACTCAGCATGGTGATGAGACTGACA
CATGGGCAGATGTTTCTAACAGACGTCACCGGAAAGACCACAGACGATAAACTAGCGTAG
CTGATTCCTTGGGCTGGATTTTAGCACAGCCACGTATACCAGGTTTCAGACATCCAGCTG
CAGGGCTCCTGTATGGCTTAGCAGTTGAATCCCATTACTCCACTGCTATATCATATGCAG
TGATATATACCTACAATAGAAGCCATGGGTACACACCATTTTGTTTTAAGCAGTTGTCTT
TTGTTTTAAAGATGCTTTGTCTCTTGCATATGAAAAATGCATTTTACAAGCTCAGAAAGT
CAGGAACCACACAGGCTTCCATGTGCATTCTGTTTATGGAGCAGTAAGTAACTGTGGTTG
CCTAGTAGGATTTTCAGTTTCTACCTTTATCATATCTTTCTAAGTTAGTCTGTAGAAATG
AGCCAGAAGCTAAAGCCCTGCACTGGTAGTGGCCCCTAAGTATAAAATAAAAGTTTGCAG
AAGCCTTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAAAAGGCCCACAGTGACTTCTGCTGGGCATTTTCCACGATGTTTACAGACTGTGAG
TACAGCAGAATCTTTTACTGTGTGTATATAAATATATATATAAACAACTGTACATTTCTT
TTAGCCAGTTTTTCTGTGATTGTCTCTGTGTTGGTGCGTGTGGTATATGCATGCTGTGGC
TGGTGTGTGTGGACTTAAAAGTGACCTGATATTTCCGCCCTGTAGTTGTGCCAAAGCACA
CACCCTAAGTGGAATCTAAGTGCTGGTTCCTGACGACCACCGGCCTCAGTCAGTTTTACT
CTGTCTCTGTTAATAAATTTTGTGACCATGTTACCAGTACAAACGGCATATTGGAGGCAG
CACAGAAAGGGACAAGCAATGGGTTGGCAACGGGGTTTTGTTTGGTTGGTTTGTTGGCTG
GCTGGTTTGAAAAAAGCAGTATTTGGTGTTGTGTTTTTCCCTGTGCCGGAGCAAAAGTCA
TTAAAGTTGGAGGTCTTATCTTGTCCCAGTCCTCAACTCAGCATGGTGATGAGACTGACA
CATGGGCAGATGTTTCTAACAGACGTCACCGGAAAGACCACAGACGATAAACTAGCGTAG
CTGATTCCTTGGGCTGGATTTTAGCACAGCCACGTATACCAGGTTTCAGACATCCAGCTG
CAGGGCTCCTGTATGGCTTAGCAGTTGAATCCCATTACTCCACTGCTATATCATATGCAG
TGATATATACCTACAATAGAAGCCATGGGTACACACCATTTTGTTTTAAGCAGTTGTCTT
TTGTTTTAAAGATGCTTTGTCTCTTGCATATGAAAAATGCATTTTACAAGCTCAGAAAGT
CAGGAACCACACAGGCTTCCATGTGCATTCTGTTTATGGAGCAGTAAGTAACTGTGGTTG
CCTAGTAGGATTTTCAGTTTCTACCTTTATCATATCTTTCTAAGTTAGTCTGTAGAAATG
AGCCAGAAGCTAAAGCCCTGCACTGGTAGTGGCCCCTAAGTATAAAATAAAAGTTTGCAG
AAGCCTTGAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1028, gnl|bosTau2|chr17 (5434782-5435832)
               

               
               1-1028, gnl|Hg17|chr4 (148822659-148823711)
               

               
               1-1028, gnl|Mm7|chr8 (76203927-76202698)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1028, gnl|bosTau2|chr17 (5434782-5435832)
               

               
               1-1028, gnl|Hg17|chr4 (148822659-148823711)
               

               
               1-1028, gnl|Mm7|chr8 (76203927-76202698)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               hlv (0.139256)

	1-1028, gnl\|bosTau2\|chr17 (5434782-5435832)
	1-1028, gnl\|Hg17\|chr4 (148822659-148823711)
	1-1028, gnl\|Mm7\|chr8 (76203927-76202698)