Non-Coding RNA Search

Ss1.1-rhea11_i24.5

Sequence:


               
               TTTTTTTCTTCTCTGGTAATTTTCCAAAGTTGGTTCCTTTTCAAGTAATCAGGAAGACTA
TTAAATGAATCCAATTTTAACAGCTGCAAATTTATTCTTCGGTGTATTTCAAGCTCATAT
GGCTCTGTAGTATCAATATTGCTAGTAGTAGCCTAAGTGTGAATGTGTATTCCTGGCAAG
GAGCAGATTTTCATTTTAATTGACACTTTCTTTTATATACCAAATCTTGGATGCCAAGAG
CTTTCTTTCCTAGTAGTTGTAAATGCTAAATCTATACTTGACGTCACCACCTCCTGTCAA
GATAAATACAAGCTTTGTTCCCCTCACAGGAGCTTAAAGAATAAATTTAATTGTTGGCCT
GTTTGGGGGGATGTTGTTTTCAGCCAGGCATCACATGGACCCAGCTGCAAAGATTTTCAG
CGCCTAAAGCAAAATCACTGCCTTTTTTAGTTCTGAAACATGTAGCAATTGAGATGAGGA
TTTTAGGATCGCTCACTTATTTTTAATTCTGTGATATGGAAGTGGCAACAATAAAATCAT
TAATACTCCAAGTGGGAGTATGTTACGTCCTCTAAGTTTATTCAGAAAGTGTCTTGTAGA
GCTAAGAAAGCTACTTACAGTGGCAAGTATCCCTGCGCTTACAGAGATATAGGGAACAGA
GTCTTTTGGCAGTTTGGGAGCAAAGGGATAGATACTCTATGCTTAATAAAAATCAATTTT
TGGATGTGCCTTAGAAAACTAACGAACTCACATCTATCTAGTGATTCAGATCTCTGAGCT
AAGGCACATAAAGGTCTGTTAGTAAAAAGAAGTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTCTTCTCTGGTAATTTTCCAAAGTTGGTTCCTTTTCAAGTAATCAGGAAGACTA
TTAAATGAATCCAATTTTAACAGCTGCAAATTTATTCTTCGGTGTATTTCAAGCTCATAT
GGCTCTGTAGTATCAATATTGCTAGTAGTAGCCTAAGTGTGAATGTGTATTCCTGGCAAG
GAGCAGATTTTCATTTTAATTGACACTTTCTTTTATATACCAAATCTTGGATGCCAAGAG
CTTTCTTTCCTAGTAGTTGTAAATGCTAAATCTATACTTGACGTCACCACCTCCTGTCAA
GATAAATACAAGCTTTGTTCCCCTCACAGGAGCTTAAAGAATAAATTTAATTGTTGGCCT
GTTTGGGGGGATGTTGTTTTCAGCCAGGCATCACATGGACCCAGCTGCAAAGATTTTCAG
CGCCTAAAGCAAAATCACTGCCTTTTTTAGTTCTGAAACATGTAGCAATTGAGATGAGGA
TTTTAGGATCGCTCACTTATTTTTAATTCTGTGATATGGAAGTGGCAACAATAAAATCAT
TAATACTCCAAGTGGGAGTATGTTACGTCCTCTAAGTTTATTCAGAAAGTGTCTTGTAGA
GCTAAGAAAGCTACTTACAGTGGCAAGTATCCCTGCGCTTACAGAGATATAGGGAACAGA
GTCTTTTGGCAGTTTGGGAGCAAAGGGATAGATACTCTATGCTTAATAAAAATCAATTTT
TGGATGTGCCTTAGAAAACTAACGAACTCACATCTATCTAGTGATTCAGATCTCTGAGCT
AAGGCACATAAAGGTCTGTTAGTAAAAAGAAGTGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               88-198, - strand, RNAz p=0.505573
               

               
               593-731, + strand, RNAz p=0.876763

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-198, - strand, RNAz p=0.505573
               

               
               593-731, + strand, RNAz p=0.876763

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-731, gnl|bosTau2|chr3 (25861849-25861140)
               

               
               9-731, gnl|Hg17|chr1 (109856398-109857066)
               

               
               9-731, gnl|Mm7|chr3 (107920293-107919688)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-731, gnl|bosTau2|chr3 (25861849-25861140)
               

               
               9-731, gnl|Hg17|chr1 (109856398-109857066)
               

               
               9-731, gnl|Mm7|chr3 (107920293-107919688)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               sug (0.127291)

	88-198, - strand, RNAz p=0.505573
	593-731, + strand, RNAz p=0.876763

	9-731, gnl\|bosTau2\|chr3 (25861849-25861140)
	9-731, gnl\|Hg17\|chr1 (109856398-109857066)
	9-731, gnl\|Mm7\|chr3 (107920293-107919688)