Non-Coding RNA Search

Ss1.1-rhea13_b10.5

Sequence:


               
               TGCTTCCCTTCATTCACATCGATGTATTAAATTTCTAATTTTAGCATCGCCTATAGATCT
GTCATTCCTTCCAAATGCCGTTATTCTTGGAGTAGAATCCTAAGGAAGAGTTAGTGGGTT
CTAGGTTTAGACGAAGAGCTAAAAAATGTAGTCTTTAACACATTAAAAAATAAAATATGA
AGTAGTAGGGTGCTTTCCCATCTACATTAACCCCTTTCCTTTCAGAGACAGCTGCCTTGA
GGGAAGTTCTCTTCAAACTGCAGTAGGTCCAGGGGCCAGTCCTAGTTGGAGCTGAGGAGG
GGTGATTATGTGCTGACCTTGGCCATGGATTGAAAGTGTGGCAGTTTGAAGAGAACTTCC
CCCAAACCAGGAATATTCTTCAAAAGAACGTGAGTGGGAAAACTGCCAGTGATGCTTTAT
TAGTATTTCTCATCTTGCCTGATGTCTTTGATAGATTTGAGAATGGGCGGATGAAGGCAA
ACTCAGTTCTCAAGATTCTAGATGAACTATCAGGACGGACTCCCTAAGTAGGATGCTGGT
CCAGTTTTTACCAAAGAACCAATTCCGTGAATGTTGGAACCTAACTTTTTTTTTTTTTAT
ATATATTACCATTATGATATCATTACTGTGTTAAAAGCGAGTCTTTGTCTTTTCTGTTGT
ACTTTTTTCAAATTGCTTTCAGGAGCTAGCTGGAAATAACGTTTTATAAAGACTTGAGAA
GATTTTGCTTCCCTTCATTCACATCGATGTATTAAATTTCTAATTTTAGCATCGCCTATA
GATCTGTCATTCCTTCCAAATGCCGTTATTCTTGGAGTAGAATCCTAAGGAAGAGTTAGT
GGGTTCTAGGTTTAGACGAAGAGCTAAAAAATGTAGTCTTTAACACATTAAAAAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTCCCTTCATTCACATCGATGTATTAAATTTCTAATTTTAGCATCGCCTATAGATCT
GTCATTCCTTCCAAATGCCGTTATTCTTGGAGTAGAATCCTAAGGAAGAGTTAGTGGGTT
CTAGGTTTAGACGAAGAGCTAAAAAATGTAGTCTTTAACACATTAAAAAATAAAATATGA
AGTAGTAGGGTGCTTTCCCATCTACATTAACCCCTTTCCTTTCAGAGACAGCTGCCTTGA
GGGAAGTTCTCTTCAAACTGCAGTAGGTCCAGGGGCCAGTCCTAGTTGGAGCTGAGGAGG
GGTGATTATGTGCTGACCTTGGCCATGGATTGAAAGTGTGGCAGTTTGAAGAGAACTTCC
CCCAAACCAGGAATATTCTTCAAAAGAACGTGAGTGGGAAAACTGCCAGTGATGCTTTAT
TAGTATTTCTCATCTTGCCTGATGTCTTTGATAGATTTGAGAATGGGCGGATGAAGGCAA
ACTCAGTTCTCAAGATTCTAGATGAACTATCAGGACGGACTCCCTAAGTAGGATGCTGGT
CCAGTTTTTACCAAAGAACCAATTCCGTGAATGTTGGAACCTAACTTTTTTTTTTTTTAT
ATATATTACCATTATGATATCATTACTGTGTTAAAAGCGAGTCTTTGTCTTTTCTGTTGT
ACTTTTTTCAAATTGCTTTCAGGAGCTAGCTGGAAATAACGTTTTATAAAGACTTGAGAA
GATTTTGCTTCCCTTCATTCACATCGATGTATTAAATTTCTAATTTTAGCATCGCCTATA
GATCTGTCATTCCTTCCAAATGCCGTTATTCTTGGAGTAGAATCCTAAGGAAGAGTTAGT
GGGTTCTAGGTTTAGACGAAGAGCTAAAAAATGTAGTCTTTAACACATTAAAAAATAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-303, gnl|bosTau2|chr8 (31139528-31139213)
               

               
               1-303, gnl|canFam2|chr25 (37844310-37844722)
               

               
               1-303, gnl|dasNov1|scaffold_102614 (871-1265)
               

               
               1-303, gnl|echTel1|scaffold_281699 (19421-19801)
               

               
               1-303, gnl|hg17|chr19 (44957496-44957917)
               

               
               1-303, gnl|Hg17|chr8 (22335133-22335447)
               

               
               1-303, gnl|loxAfr1|scaffold_876 (139156-138752)
               

               
               1-303, gnl|oryCun1|scaffold_173964 (77215-77581)
               

               
               1-303, gnl|panTro1|chr20 (41884099-41884517)
               

               
               1-303, gnl|rheMac2|chr19 (46134485-46134904)
               


               
               354-900, gnl|bosTau2|chr8 (31139889-31139356)
               

               
               354-900, gnl|Hg17|chr8 (22334774-22335312)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-303, gnl|bosTau2|chr8 (31139528-31139213)
               

               
               1-303, gnl|canFam2|chr25 (37844310-37844722)
               

               
               1-303, gnl|dasNov1|scaffold_102614 (871-1265)
               

               
               1-303, gnl|echTel1|scaffold_281699 (19421-19801)
               

               
               1-303, gnl|hg17|chr19 (44957496-44957917)
               

               
               1-303, gnl|Hg17|chr8 (22335133-22335447)
               

               
               1-303, gnl|loxAfr1|scaffold_876 (139156-138752)
               

               
               1-303, gnl|oryCun1|scaffold_173964 (77215-77581)
               

               
               1-303, gnl|panTro1|chr20 (41884099-41884517)
               

               
               1-303, gnl|rheMac2|chr19 (46134485-46134904)
               


               
               354-900, gnl|bosTau2|chr8 (31139889-31139356)
               

               
               354-900, gnl|Hg17|chr8 (22334774-22335312)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               hea (0.204499)
               

               
               duo (0.172801)
               

               
               cli (0.152812)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               duo (0.172801)
               

               
               cli (0.152812)

	1-303, gnl\|bosTau2\|chr8 (31139528-31139213)
	1-303, gnl\|canFam2\|chr25 (37844310-37844722)
	1-303, gnl\|dasNov1\|scaffold_102614 (871-1265)
	1-303, gnl\|echTel1\|scaffold_281699 (19421-19801)
	1-303, gnl\|hg17\|chr19 (44957496-44957917)
	1-303, gnl\|Hg17\|chr8 (22335133-22335447)
	1-303, gnl\|loxAfr1\|scaffold_876 (139156-138752)
	1-303, gnl\|oryCun1\|scaffold_173964 (77215-77581)
	1-303, gnl\|panTro1\|chr20 (41884099-41884517)
	1-303, gnl\|rheMac2\|chr19 (46134485-46134904)

	354-900, gnl\|bosTau2\|chr8 (31139889-31139356)
	354-900, gnl\|Hg17\|chr8 (22334774-22335312)