Non-Coding RNA Search

Ss1.1-rhea14_d2.5

Sequence:


               
               ATCTCGAGGAGCGCGGTTACCGGTTGGGCTGGGTCTATGGTCGCTCTGTGGGCCGCTCCA
CCGGCTGGTGCTTTTTTATCAGGGCAAGCTGTGTTCCATGGCAGGGAACTTTTGGCAGAG
CTCCCATTATTTGCAATGGATTTTGGATAAACAAGATCTGTTGAAGGAACGCCAAAAGGA
CTTAAAGTTTCTCTCAGAAGAAGAGTATTGGAAATTACAGATATTTTTTACAAATGTTAT
CCAAGCATTAGGTGAACATCTTAAATTAAGACAACAAGTTATTGCCACTGCTACGGTCTA
TTTCAAGAGATTCTATGCCAGGTATTCTCTGAAAAGTATAGATCCTGTATTAATGGCTCC
TACATGTGTGTTTTTGGCATCCAAAGTAGAGGAATTTGGAGTGGTCTCAAATACAAGATT
GATTTCTGCTGCTACTTCTGTATTAAAAACTAGATTTTCATATGCCTTTCCAAAGGAGTT
TCCTTATAGGATGAACCATATATTAGAATGTGAATTCTATCTTTTAGAATTAATGGATTG
TTGCTTGATAGTGTATCATCCTTATAGACCTTTGCTCCAGTATGTGCAGGACATGGGCCA
AGAAGACATGTTGCTGCCCCTTGCATGGAGGATAGTGAATGATACCTACAGGACGGATCT
TTGCCTACTGTATCCTCCTTTCATGATAGCTTTAGCCTGCCTGCATGTAGCCTGTGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCGAGGAGCGCGGTTACCGGTTGGGCTGGGTCTATGGTCGCTCTGTGGGCCGCTCCA
CCGGCTGGTGCTTTTTTATCAGGGCAAGCTGTGTTCCATGGCAGGGAACTTTTGGCAGAG
CTCCCATTATTTGCAATGGATTTTGGATAAACAAGATCTGTTGAAGGAACGCCAAAAGGA
CTTAAAGTTTCTCTCAGAAGAAGAGTATTGGAAATTACAGATATTTTTTACAAATGTTAT
CCAAGCATTAGGTGAACATCTTAAATTAAGACAACAAGTTATTGCCACTGCTACGGTCTA
TTTCAAGAGATTCTATGCCAGGTATTCTCTGAAAAGTATAGATCCTGTATTAATGGCTCC
TACATGTGTGTTTTTGGCATCCAAAGTAGAGGAATTTGGAGTGGTCTCAAATACAAGATT
GATTTCTGCTGCTACTTCTGTATTAAAAACTAGATTTTCATATGCCTTTCCAAAGGAGTT
TCCTTATAGGATGAACCATATATTAGAATGTGAATTCTATCTTTTAGAATTAATGGATTG
TTGCTTGATAGTGTATCATCCTTATAGACCTTTGCTCCAGTATGTGCAGGACATGGGCCA
AGAAGACATGTTGCTGCCCCTTGCATGGAGGATAGTGAATGATACCTACAGGACGGATCT
TTGCCTACTGTATCCTCCTTTCATGATAGCTTTAGCCTGCCTGCATGTAGCCTGTGTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53127472|emb|CAG31119.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53127472|emb|CAG31119.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               61-247, - strand, RNAz p=0.762036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-247, - strand, RNAz p=0.762036

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-720, gnl|bosTau2|chr7 (27765649-27764943)
               

               
               4-720, gnl|Hg17|chr6 (100123218-100101047)
               

               
               4-720, gnl|Mm7|chr4 (21731449-21750031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-720, gnl|bosTau2|chr7 (27765649-27764943)
               

               
               4-720, gnl|Hg17|chr6 (100123218-100101047)
               

               
               4-720, gnl|Mm7|chr4 (21731449-21750031)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hea (0.204499)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	4-720, gnl\|bosTau2\|chr7 (27765649-27764943)
	4-720, gnl\|Hg17\|chr6 (100123218-100101047)
	4-720, gnl\|Mm7\|chr4 (21731449-21750031)