Ss1.1-rhea14_f15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTGCCTCTGATGTCACCAGATTCCCAGTGCTGGGAGGAGGCCATGGCCGCAGCGTTCC AGCTGGCAAGTTTTGTCCTGGTCATCGGGCTGGTGACATTCTACAGGATCGGCCCGTACA CCAACCTGTCCTGGTCCTGCTACCTGGACATCGGCGCCTGCCTGCTGGCCACGCTGGCCG CTGCCATGCTCATCTGGAACGTTCTTCACAGGAGGGAGGACTGCATGGCCCCCCGTGTCA TCGTCATCAGCCGCTCCCTGGCCGCAAGGTTTCGCCGAGGGCTGGACAATGACTACGTGG AGTCGCCGTGCTGAGGGCTGCAGGGAGGCCGCCTGGGGCTTCACCTGCCGAGGGGGCATC TAGGAAGCGGGCGCTGCTGGTGGGGAGCTGTGACCGGCGGTTTCCTGCGGGAGCATCTCT ACGTTGGACATGGACACAGCAAGTGGCTGACCCGGGGGGCAGCTCGAGCGGGCGGTGGCT GCTGTGTTCTCCGCCCTGGCCCAAGATTAATTTATTCGGCGTCCCCCAAGACGGGCGCCC TCGGTCACGTTCACTTTGGTAAAGCAGGGCCTGGGGAAGAGTTTCCTGAACTGTCTCTGA TCTTCCTCTGGTGACTCAGAATTTAGAGTCAGATGGTTGCGGCTTTTCGACAGGATTGTG ACAGTCATATCATCTACGCTTGGTTATTTTCCTAAGTTAAAATAAAATGCAGACCTCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTGCCTCTGATGTCACCAGATTCCCAGTGCTGGGAGGAGGCCATGGCCGCAGCGTTCC AGCTGGCAAGTTTTGTCCTGGTCATCGGGCTGGTGACATTCTACAGGATCGGCCCGTACA CCAACCTGTCCTGGTCCTGCTACCTGGACATCGGCGCCTGCCTGCTGGCCACGCTGGCCG CTGCCATGCTCATCTGGAACGTTCTTCACAGGAGGGAGGACTGCATGGCCCCCCGTGTCA TCGTCATCAGCCGCTCCCTGGCCGCAAGGTTTCGCCGAGGGCTGGACAATGACTACGTGG AGTCGCCGTGCTGAGGGCTGCAGGGAGGCCGCCTGGGGCTTCACCTGCCGAGGGGGCATC TAGGAAGCGGGCGCTGCTGGTGGGGAGCTGTGACCGGCGGTTTCCTGCGGGAGCATCTCT ACGTTGGACATGGACACAGCAAGTGGCTGACCCGGGGGGCAGCTCGAGCGGGCGGTGGCT GCTGTGTTCTCCGCCCTGGCCCAAGATTAATTTATTCGGCGTCCCCCAAGACGGGCGCCC TCGGTCACGTTCACTTTGGTAAAGCAGGGCCTGGGGAAGAGTTTCCTGAACTGTCTCTGA TCTTCCTCTGGTGACTCAGAATTTAGAGTCAGATGGTTGCGGCTTTTCGACAGGATTGTG ACAGTCATATCATCTACGCTTGGTTATTTTCCTAAGTTAAAATAAAATGCAGACCTCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 221-317, - strand, RNAz p=0.805536 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 221-317, - strand, RNAz p=0.805536 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 131-317, gnl|bosTau2|chr25 (2731912-2731726) | |
| 131-317, gnl|canFam2|chr6 (42316686-42316483) | |
| 131-317, gnl|danRer3|chr24 (30612650-30612833) | |
| 131-317, gnl|echTel1|scaffold_194357 (3380-3571) | |
| 131-317, gnl|fr1|chrUn (22072653-22072839) | |
| 131-317, gnl|galGal2|chr14 (20495856-20496039) | |
| 131-317, gnl|hg17|chr16 (1544846-1545037) | |
| 131-317, gnl|Hg17|chr16 (1544845-1545053) | |
| 131-317, gnl|loxAfr1|scaffold_50538 (7343-7534) | |
| 131-317, gnl|mm7|chr17 (23241504-23241312) | |
| 131-317, gnl|Mm7|chr17 (23241502-23241317) | |
| 131-317, gnl|monDom2|scaffold_5 (122401896-122401690) | |
| 131-317, gnl|oryCun1|scaffold_157984 (9298-9489) | |
| 131-317, gnl|rheMac2|chr20 (1543513-1543704) | |
| 131-317, gnl|rn3|chr10 (14305286-14305094) | |
| 131-317, gnl|tetNig1|chr2 (4885292-4885108) | |
| 131-317, gnl|xenTro1|scaffold_12 (3557623-3557806) | |
| 489-720, gnl|bosTau2|chr25 (2731564-2731336) | |
| 489-720, gnl|canFam2|chr6 (42316321-42315904) | |
| 489-720, gnl|hg17|chr16 (1545225-1545654) | |
| 489-720, gnl|Hg17|chr16 (1545342-1545569) | |
| 489-720, gnl|loxAfr1|scaffold_50538 (7725-8159) | |
| 489-720, gnl|mm7|chr17 (23241126-23240753) | |
| 489-720, gnl|Mm7|chr17 (23241014-23240798) | |
| 489-720, gnl|monDom2|scaffold_5 (122401499-122401053) | |
| 489-720, gnl|oryCun1|scaffold_157984 (9644-10031) | |
| 489-720, gnl|panTro1|chr18 (1622087-1622512) | |
| 489-720, gnl|rheMac2|chr20 (1543891-1544319) | |
| 489-720, gnl|rn3|chr10 (14304908-14304511) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-317, gnl|bosTau2|chr25 (2731912-2731726) | |
| 131-317, gnl|canFam2|chr6 (42316686-42316483) | |
| 131-317, gnl|danRer3|chr24 (30612650-30612833) | |
| 131-317, gnl|echTel1|scaffold_194357 (3380-3571) | |
| 131-317, gnl|fr1|chrUn (22072653-22072839) | |
| 131-317, gnl|galGal2|chr14 (20495856-20496039) | |
| 131-317, gnl|hg17|chr16 (1544846-1545037) | |
| 131-317, gnl|Hg17|chr16 (1544845-1545053) | |
| 131-317, gnl|loxAfr1|scaffold_50538 (7343-7534) | |
| 131-317, gnl|mm7|chr17 (23241504-23241312) | |
| 131-317, gnl|Mm7|chr17 (23241502-23241317) | |
| 131-317, gnl|monDom2|scaffold_5 (122401896-122401690) | |
| 131-317, gnl|oryCun1|scaffold_157984 (9298-9489) | |
| 131-317, gnl|rheMac2|chr20 (1543513-1543704) | |
| 131-317, gnl|rn3|chr10 (14305286-14305094) | |
| 131-317, gnl|tetNig1|chr2 (4885292-4885108) | |
| 131-317, gnl|xenTro1|scaffold_12 (3557623-3557806) | |
| 489-720, gnl|bosTau2|chr25 (2731564-2731336) | |
| 489-720, gnl|canFam2|chr6 (42316321-42315904) | |
| 489-720, gnl|hg17|chr16 (1545225-1545654) | |
| 489-720, gnl|Hg17|chr16 (1545342-1545569) | |
| 489-720, gnl|loxAfr1|scaffold_50538 (7725-8159) | |
| 489-720, gnl|mm7|chr17 (23241126-23240753) | |
| 489-720, gnl|Mm7|chr17 (23241014-23240798) | |
| 489-720, gnl|monDom2|scaffold_5 (122401499-122401053) | |
| 489-720, gnl|oryCun1|scaffold_157984 (9644-10031) | |
| 489-720, gnl|panTro1|chr18 (1622087-1622512) | |
| 489-720, gnl|rheMac2|chr20 (1543891-1544319) | |
| 489-720, gnl|rn3|chr10 (14304908-14304511) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nms (0.213858) | |
| hea (0.204499) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| hea (0.204499) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| eru (0.120048) |