Non-Coding RNA Search

Ss1.1-rhea14_n6.5

Sequence:


               
               GGCAACCAGTGCCGTCCCCAGTGACAACCTCCCCACATACAAGCTGGTGGTGGTGGGAGA
CGGGGGCGTGGGCAAGAGTGCCCTCACCATCCAGTTTTTCCAGAAGATCTTTGTGCCTGA
CTATGACCCCACCATTGAAGACTCCTACCTGAAACACACCGAGATTGACAATCAATGGGC
CATCTTGGACGTTCTGGACACGGCGGGGCAGGAAGAGTTCAGCGCCATGCGGGAGCAGTA
CATGCGCACGGGGGACGGCTTCCTCATCGTCTTCTCGGTCACGGACAAGGCCAGCTTCGA
ACACGTGGACCGTTTCCACCAGCTCATCCTGCGTGTCAAGGACAGGGAGTCATTCCCGAT
GATCCTCGTGGCCAACAAGGTCGATTTGATGCATTTGAGGAAAATCACCAGGGAGCAAGG
AAAAGAAATGGCGACCAAACACAATATTCCGTACATAGAAACCAGTGCCAAGGACCCACC
TCTCAACGTGGACAAAGCCTTCCATGACCTGGTTAGAGTAATTAGGCAACAGATTCCAGA
AAAAAGCCAGAAGAAGAAGAAGAAAACCAAATGGCGGGGAGACCGGGCCACTGGCACCCA
CAAACTGCAGTGCGTGATATTGTGATGGCCCGAGGCCCTGGGCACAGTGACCGGGAACTG
GCCAGCCCTCGGGACCCCTCCACTGCCTAACCGCACTGAAGACCATTTCTAACCATGACC
CTTGGCCCGAGGACTTGGCACAGGAAGGGAGAGGGGGAGGGTGGGTGGGGAGGAGATAGG
GTCTGGCTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAACCAGTGCCGTCCCCAGTGACAACCTCCCCACATACAAGCTGGTGGTGGTGGGAGA
CGGGGGCGTGGGCAAGAGTGCCCTCACCATCCAGTTTTTCCAGAAGATCTTTGTGCCTGA
CTATGACCCCACCATTGAAGACTCCTACCTGAAACACACCGAGATTGACAATCAATGGGC
CATCTTGGACGTTCTGGACACGGCGGGGCAGGAAGAGTTCAGCGCCATGCGGGAGCAGTA
CATGCGCACGGGGGACGGCTTCCTCATCGTCTTCTCGGTCACGGACAAGGCCAGCTTCGA
ACACGTGGACCGTTTCCACCAGCTCATCCTGCGTGTCAAGGACAGGGAGTCATTCCCGAT
GATCCTCGTGGCCAACAAGGTCGATTTGATGCATTTGAGGAAAATCACCAGGGAGCAAGG
AAAAGAAATGGCGACCAAACACAATATTCCGTACATAGAAACCAGTGCCAAGGACCCACC
TCTCAACGTGGACAAAGCCTTCCATGACCTGGTTAGAGTAATTAGGCAACAGATTCCAGA
AAAAAGCCAGAAGAAGAAGAAGAAAACCAAATGGCGGGGAGACCGGGCCACTGGCACCCA
CAAACTGCAGTGCGTGATATTGTGATGGCCCGAGGCCCTGGGCACAGTGACCGGGAACTG
GCCAGCCCTCGGGACCCCTCCACTGCCTAACCGCACTGAAGACCATTTCTAACCATGACC
CTTGGCCCGAGGACTTGGCACAGGAAGGGAGAGGGGGAGGGTGGGTGGGGAGGAGATAGG
GTCTGGCTTTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6FGP0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FGP0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-519, - strand, RNAz p=0.867041

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-519, - strand, RNAz p=0.867041

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-790, gnl|bosTau2|chr13 (39625979-39626750)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr13 (39625979-39626750)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ecc (0.115035)