Non-Coding RNA Search

Ss1.1-rhea16_m2.5

Sequence:


               
               CAGGGAACTGAGCTCTGGAAAGGGTGAAAGCCACTACAGGACGGAAGCCAAGCCATTATG
GCAGATGAACCTGCTGGATTTGTAAATAATTTAAAATCCTTCTAGCTGATCTTTTACTCT
TGGATTTTGAGCTTCTGATTCAAAATGGGGAATACAAGAGTTTTTTTCTGTATACTGTAT
TTTTTAAAAAAAATCATTTGTGCAGCGAGGCCAAACATACCAATTTGATGCATTAACTCT
AAGAAATTGTACGATGTTTAGGAAGGACCTGAAATGTAAGTGCTGTTTATTCTTCTTCTG
GGGTTTACTGATCAGTGTGGTAATTTTAACTTCATTTAGTAATTACTCTAGGAGATTTTA
CCTTTACTTATTTTTCATGACGTTTCATGATTTGCTGTTGGTTTCAAATGAAACTACAAA
TCTGGCATGTTTTACTGTGAACACTATTTTGTTTGTTTGTTTACCTTTTTTGGTCTTGTT
TTTTTCTGTTTGAATGTCTTATGAAAAAAGAGAATCCTTCCCCTTGTTTCTGTCCTTGGA
TGACTCCCCACCCCTCTCAATACTGTTCATTCATGTAATTGTTTATATTAATCAAGGTGC
TGACCAATTCAGTACAAAGTTAAGCACGAGATCTAAAGCTCTCAAAAGTGCCCTTGAAGA
GAAAACCCTGAGTGTTCACAAATTTAGTGAGTCCTGAAAAAGTTGAAAATTATATGCAAT
TTTGACTTTCCCTTATGAATCTACAATGTTGCATTGGATTTATTTTATGTTAGGTCATAT
TAAATTGAGACGTTCTCTGATGGAATGTCCTCATCCATGCACAGCATATGAATGGCAGCA
AATCCTTGTCCAGATGTTGGGATTTACAGGGGCAAGTCTCCTAGCAGAGTAACTGTACAC
ACTGGGAGGTTTAGGAGAAGTCATGGCTTGAGGTGTCCATGTAGTCATATCTGTGTTTTG
TACATGTATGTACCTAGGAGCTTTGTAACAAGGCATCTTAAATAATAATAAAGTTTTTTT
TAGTTGAAATATTTTAAGCTGAAAATTATATTTCAATCCCACTTTCTAAAATTTGAAAAG
AATATGATACTGATGTATTTTTTTTTTCTGTTTAAATGAAATCATTGGGACCGATGGGTA
ACTTTCTAATGAGAGTCTTGTATAAATATTGAAACACATGAGATCTAATGATTTAAAACT
AAGAAATCCTTTCAGTTGATTTTTTGAAGGGCAGAACAGTTGCTCCATGATGAAACTTTC
TTCCTTCTCTGCCTGGGCACCATCTCTAATTCCCATGTCTTCAAGTCTTGAAGAAGTTGA
TGTTAATTGAAACATTCACTTGTCTGGTTGAAATAAAGCCTGTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGAACTGAGCTCTGGAAAGGGTGAAAGCCACTACAGGACGGAAGCCAAGCCATTATG
GCAGATGAACCTGCTGGATTTGTAAATAATTTAAAATCCTTCTAGCTGATCTTTTACTCT
TGGATTTTGAGCTTCTGATTCAAAATGGGGAATACAAGAGTTTTTTTCTGTATACTGTAT
TTTTTAAAAAAAATCATTTGTGCAGCGAGGCCAAACATACCAATTTGATGCATTAACTCT
AAGAAATTGTACGATGTTTAGGAAGGACCTGAAATGTAAGTGCTGTTTATTCTTCTTCTG
GGGTTTACTGATCAGTGTGGTAATTTTAACTTCATTTAGTAATTACTCTAGGAGATTTTA
CCTTTACTTATTTTTCATGACGTTTCATGATTTGCTGTTGGTTTCAAATGAAACTACAAA
TCTGGCATGTTTTACTGTGAACACTATTTTGTTTGTTTGTTTACCTTTTTTGGTCTTGTT
TTTTTCTGTTTGAATGTCTTATGAAAAAAGAGAATCCTTCCCCTTGTTTCTGTCCTTGGA
TGACTCCCCACCCCTCTCAATACTGTTCATTCATGTAATTGTTTATATTAATCAAGGTGC
TGACCAATTCAGTACAAAGTTAAGCACGAGATCTAAAGCTCTCAAAAGTGCCCTTGAAGA
GAAAACCCTGAGTGTTCACAAATTTAGTGAGTCCTGAAAAAGTTGAAAATTATATGCAAT
TTTGACTTTCCCTTATGAATCTACAATGTTGCATTGGATTTATTTTATGTTAGGTCATAT
TAAATTGAGACGTTCTCTGATGGAATGTCCTCATCCATGCACAGCATATGAATGGCAGCA
AATCCTTGTCCAGATGTTGGGATTTACAGGGGCAAGTCTCCTAGCAGAGTAACTGTACAC
ACTGGGAGGTTTAGGAGAAGTCATGGCTTGAGGTGTCCATGTAGTCATATCTGTGTTTTG
TACATGTATGTACCTAGGAGCTTTGTAACAAGGCATCTTAAATAATAATAAAGTTTTTTT
TAGTTGAAATATTTTAAGCTGAAAATTATATTTCAATCCCACTTTCTAAAATTTGAAAAG
AATATGATACTGATGTATTTTTTTTTTCTGTTTAAATGAAATCATTGGGACCGATGGGTA
ACTTTCTAATGAGAGTCTTGTATAAATATTGAAACACATGAGATCTAATGATTTAAAACT
AAGAAATCCTTTCAGTTGATTTTTTGAAGGGCAGAACAGTTGCTCCATGATGAAACTTTC
TTCCTTCTCTGCCTGGGCACCATCTCTAATTCCCATGTCTTCAAGTCTTGAAGAAGTTGA
TGTTAATTGAAACATTCACTTGTCTGGTTGAAATAAAGCCTGTTTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-466, + strand, RNAz p=0.997492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-466, + strand, RNAz p=0.997492

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               283-460, + strand, RNAmicro p=0.992013

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               283-460, + strand, RNAmicro p=0.992013

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_138316, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138316, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-1368, gnl|bosTau2|chr26 (7134601-7135995)
               

               
               15-1368, gnl|Hg17|chr10 (91334086-91332731)
               

               
               15-1368, gnl|Mm7|chr19 (34513590-34512204)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1368, gnl|bosTau2|chr26 (7134601-7135995)
               

               
               15-1368, gnl|Hg17|chr10 (91334086-91332731)
               

               
               15-1368, gnl|Mm7|chr19 (34513590-34512204)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pan (0.23596)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	15-1368, gnl\|bosTau2\|chr26 (7134601-7135995)
	15-1368, gnl\|Hg17\|chr10 (91334086-91332731)
	15-1368, gnl\|Mm7\|chr19 (34513590-34512204)

	pan (0.23596)
	hea (0.204499)
	gul (0.177588)
	eye (0.170503)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	eje (0.0988338)