Non-Coding RNA Search

Ss1.1-rhea18_h24.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGCCGGGGTCTGAGCTACAATATAAAACATAAATCTTGTTTGT
GGAACAAAATTTGGAAAGAAAGAAAGGAAAGAAAAAAAAAAAAACCTCCAACCCTGTTTC
TGGGTAAAATTCCACACATTGATGGAGTGGGCTTCAGGAAAGGTTTTCTCAAGCAGGTGG
AAGGAGTTTTTTTTTTTTTCCAGCACAAAATCAGTTCCTCAAATTGACCAATAGCTGCTG
CTTTTGTACTTTTGATATGGATCTGCAGTCCCGGCGTGTGGCTCACGTGTGTACTCTGTG
TGTGTGTGCGCGCGCGCGCACGCGCGCCTGTGCTTATGTGTGTGTTCAAATTATGCGTGC
CGAGTTGACTCTTTGGGGATCAGCCCAGGAAGGTTCTGCTCTTCAGGAGTGTGTGAGCCT
CTGATCCCCTCCGCCTCCTTCTTATCTGCTGGGAGACTGTGCCCTCAATAGATCCTTCTT
CTGTCCCATAGCCTCAGGAGTCTTCTCTCCCTACACTTTGATGAAAAATGTTTTCTGGGA
GCCAAGGGAGTCATTTGGAGTGATCATGGATCTTTTCAAGACCAAACAAGCCAGGACATT
AAAAAAAAAAAAAAAGAAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGCCGGGGTCTGAGCTACAATATAAAACATAAATCTTGTTTGT
GGAACAAAATTTGGAAAGAAAGAAAGGAAAGAAAAAAAAAAAAACCTCCAACCCTGTTTC
TGGGTAAAATTCCACACATTGATGGAGTGGGCTTCAGGAAAGGTTTTCTCAAGCAGGTGG
AAGGAGTTTTTTTTTTTTTCCAGCACAAAATCAGTTCCTCAAATTGACCAATAGCTGCTG
CTTTTGTACTTTTGATATGGATCTGCAGTCCCGGCGTGTGGCTCACGTGTGTACTCTGTG
TGTGTGTGCGCGCGCGCGCACGCGCGCCTGTGCTTATGTGTGTGTTCAAATTATGCGTGC
CGAGTTGACTCTTTGGGGATCAGCCCAGGAAGGTTCTGCTCTTCAGGAGTGTGTGAGCCT
CTGATCCCCTCCGCCTCCTTCTTATCTGCTGGGAGACTGTGCCCTCAATAGATCCTTCTT
CTGTCCCATAGCCTCAGGAGTCTTCTCTCCCTACACTTTGATGAAAAATGTTTTCTGGGA
GCCAAGGGAGTCATTTGGAGTGATCATGGATCTTTTCAAGACCAAACAAGCCAGGACATT
AAAAAAAAAAAAAAAGAAAGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               252-384, + strand, RNAz p=0.999932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               252-384, + strand, RNAz p=0.999932

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of X02160, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of X02160, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-624, gnl|bosTau2|chr7 (11551225-11551762)
               

               
               87-624, gnl|Hg17|chr19 (7067666-7067126)
               

               
               87-624, gnl|Mm7|chr8 (3054546-3053898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-624, gnl|bosTau2|chr7 (11551225-11551762)
               

               
               87-624, gnl|Hg17|chr19 (7067666-7067126)
               

               
               87-624, gnl|Mm7|chr8 (3054546-3053898)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               hea (0.204499)
               

               
               cki (0.165235)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               cki (0.165235)

	87-624, gnl\|bosTau2\|chr7 (11551225-11551762)
	87-624, gnl\|Hg17\|chr19 (7067666-7067126)
	87-624, gnl\|Mm7\|chr8 (3054546-3053898)