Non-Coding RNA Search

Ss1.1-rhea19_h4.5

Sequence:


               
               CTCTGCCTCTCTCACTCATCGAAGGGCTCTCGGAGAAGGAATCAGAGTTAGGTACCAAGC
GACCTCTGTTGGGAGAGTTTTCCGTGTGGGATTGAATTCAATTCAATGTGACTCCTCTTT
CCCTTTAAACTTGATTCAGGTTGGGACTCTTGTTTCTTTCTGGTGGATCACAGCTGCCCA
GATGTTGCCATTTGATTCTTTCTGTTTCTGTAGAGGAGTATTTTCCTTTCGTCTTCAGGA
TTTTTTTTTTCTTTTTTCTTTTCTTTTTTTTTCTTTTTTTTTCTTTTTTGCCACCAAAAG
AACACATTTGAACTCCGTGTCCCCTCTTGATTGTGACTTAACCCGTGTTGACAGTTAAAC
CCTTCGTGTCGTTAAGTCCCAGCTCCAGTACTATATCAAACACTGTTATGCACATAATGC
AGCACTGTGATCTAATTTAAATAATACTTTTTTATTATTTATACTACTATATATAATAGA
CATCAACACTTTTGCTATATAACCTAAGTGATAACCCTCTTTTTAGTTACCTGCCAAAAC
TTGGGACTTTGGTTTATATCTGCAGTTAACAAGGTTACAAAGTTGTAATGGTGTCTTCTT
TTTTTTTTTTTTCCTCTTTGTAACGAAATGTGTAAATCACAGTATAGACATTGTGTGGTG
TTCCCGTTTCTGGAGTCCCATGAGGATTTACACATGGCATTCAGTGTTCTGTATAGACCC
ACCTGCCTTTGTGACTTCATCTGTTAATTCCCCGTCCTTTGAGAGAACACCTGTGATGGT
GGTGGACCCCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTACTGGTTATTCTTGA
ATTAAGCACAGACTCATCAGCTCCGTTGCTTTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGCCTCTCTCACTCATCGAAGGGCTCTCGGAGAAGGAATCAGAGTTAGGTACCAAGC
GACCTCTGTTGGGAGAGTTTTCCGTGTGGGATTGAATTCAATTCAATGTGACTCCTCTTT
CCCTTTAAACTTGATTCAGGTTGGGACTCTTGTTTCTTTCTGGTGGATCACAGCTGCCCA
GATGTTGCCATTTGATTCTTTCTGTTTCTGTAGAGGAGTATTTTCCTTTCGTCTTCAGGA
TTTTTTTTTTCTTTTTTCTTTTCTTTTTTTTTCTTTTTTTTTCTTTTTTGCCACCAAAAG
AACACATTTGAACTCCGTGTCCCCTCTTGATTGTGACTTAACCCGTGTTGACAGTTAAAC
CCTTCGTGTCGTTAAGTCCCAGCTCCAGTACTATATCAAACACTGTTATGCACATAATGC
AGCACTGTGATCTAATTTAAATAATACTTTTTTATTATTTATACTACTATATATAATAGA
CATCAACACTTTTGCTATATAACCTAAGTGATAACCCTCTTTTTAGTTACCTGCCAAAAC
TTGGGACTTTGGTTTATATCTGCAGTTAACAAGGTTACAAAGTTGTAATGGTGTCTTCTT
TTTTTTTTTTTTCCTCTTTGTAACGAAATGTGTAAATCACAGTATAGACATTGTGTGGTG
TTCCCGTTTCTGGAGTCCCATGAGGATTTACACATGGCATTCAGTGTTCTGTATAGACCC
ACCTGCCTTTGTGACTTCATCTGTTAATTCCCCGTCCTTTGAGAGAACACCTGTGATGGT
GGTGGACCCCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTACTGGTTATTCTTGA
ATTAAGCACAGACTCATCAGCTCCGTTGCTTTATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22137582|gb|AAH29185.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22137582|gb|AAH29185.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               367-484, - strand, RNAz p=0.560132

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               367-484, - strand, RNAz p=0.560132

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               15-254, gnl|bosTau2|chr10 (68415416-68415184)
               

               
               15-254, gnl|Hg17|chr14 (88694238-88694017)
               

               
               15-254, gnl|Mm7|chr12 (96686926-96686699)
               


               
               259-782, gnl|bosTau2|chr10 (68415216-68414701)
               

               
               259-782, gnl|canFam2|chr8 (63367177-63367568)
               

               
               259-782, gnl|dasNov1|scaffold_8792 (31307-30928)
               

               
               259-782, gnl|echTel1|scaffold_305909 (4553-4142)
               

               
               259-782, gnl|galGal2|chr5 (40207147-40207521)
               

               
               259-782, gnl|Hg17|chr14 (88694043-88693540)
               

               
               259-782, gnl|hg17|chr17 (12081410-12081788)
               

               
               259-782, gnl|loxAfr1|scaffold_187 (62773-63158)
               

               
               259-782, gnl|mm7|chr12 (96686147-96686557)
               

               
               259-782, gnl|Mm7|chr12 (96686741-96686189)
               

               
               259-782, gnl|monDom2|scaffold_8 (38065046-38064640)
               

               
               259-782, gnl|oryCun1|scaffold_185984 (42746-43159)
               

               
               259-782, gnl|panTro1|chr19_random (26282061-26281681)
               

               
               259-782, gnl|rheMac2|chr7 (152358699-152359080)
               

               
               259-782, gnl|rn3|chr6 (123386086-123386499)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-254, gnl|bosTau2|chr10 (68415416-68415184)
               

               
               15-254, gnl|Hg17|chr14 (88694238-88694017)
               

               
               15-254, gnl|Mm7|chr12 (96686926-96686699)
               


               
               259-782, gnl|bosTau2|chr10 (68415216-68414701)
               

               
               259-782, gnl|canFam2|chr8 (63367177-63367568)
               

               
               259-782, gnl|dasNov1|scaffold_8792 (31307-30928)
               

               
               259-782, gnl|echTel1|scaffold_305909 (4553-4142)
               

               
               259-782, gnl|galGal2|chr5 (40207147-40207521)
               

               
               259-782, gnl|Hg17|chr14 (88694043-88693540)
               

               
               259-782, gnl|hg17|chr17 (12081410-12081788)
               

               
               259-782, gnl|loxAfr1|scaffold_187 (62773-63158)
               

               
               259-782, gnl|mm7|chr12 (96686147-96686557)
               

               
               259-782, gnl|Mm7|chr12 (96686741-96686189)
               

               
               259-782, gnl|monDom2|scaffold_8 (38065046-38064640)
               

               
               259-782, gnl|oryCun1|scaffold_185984 (42746-43159)
               

               
               259-782, gnl|panTro1|chr19_random (26282061-26281681)
               

               
               259-782, gnl|rheMac2|chr7 (152358699-152359080)
               

               
               259-782, gnl|rn3|chr6 (123386086-123386499)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.286369)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               ssp (0.13552)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               ssp (0.13552)

	15-254, gnl\|bosTau2\|chr10 (68415416-68415184)
	15-254, gnl\|Hg17\|chr14 (88694238-88694017)
	15-254, gnl\|Mm7\|chr12 (96686926-96686699)

	259-782, gnl\|bosTau2\|chr10 (68415216-68414701)
	259-782, gnl\|canFam2\|chr8 (63367177-63367568)
	259-782, gnl\|dasNov1\|scaffold_8792 (31307-30928)
	259-782, gnl\|echTel1\|scaffold_305909 (4553-4142)
	259-782, gnl\|galGal2\|chr5 (40207147-40207521)
	259-782, gnl\|Hg17\|chr14 (88694043-88693540)
	259-782, gnl\|hg17\|chr17 (12081410-12081788)
	259-782, gnl\|loxAfr1\|scaffold_187 (62773-63158)
	259-782, gnl\|mm7\|chr12 (96686147-96686557)
	259-782, gnl\|Mm7\|chr12 (96686741-96686189)
	259-782, gnl\|monDom2\|scaffold_8 (38065046-38064640)
	259-782, gnl\|oryCun1\|scaffold_185984 (42746-43159)
	259-782, gnl\|panTro1\|chr19_random (26282061-26281681)
	259-782, gnl\|rheMac2\|chr7 (152358699-152359080)
	259-782, gnl\|rn3\|chr6 (123386086-123386499)